SCOPe 2.07: Structural Classification of Proteins

PDB entry 2xso

View 2xso on RCSB PDB site
Description: crystal structure of p4 variant of biphenyl dioxygenase from burkholderia xenovorans lb400
Class: oxidoreductase
Keywords: oxidoreductase
Deposited on 2010-09-29, released 2010-11-24
The last revision prior to the SCOPe 2.07 freeze date was dated 2012-10-03, with a file datestamp of 2012-09-28.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.217
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
Domains in SCOPe 2.07: d2xsoa1, d2xsoa2
Chain 'B':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d2xsob_
Chain 'C':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
Domains in SCOPe 2.07: d2xsoc1, d2xsoc2
Chain 'D':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d2xsod_
Chain 'E':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
Domains in SCOPe 2.07: d2xsoe1, d2xsoe2
Chain 'F':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d2xsof_
Chain 'G':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
Domains in SCOPe 2.07: d2xsog1, d2xsog2
Chain 'H':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d2xsoh_
Chain 'I':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
Domains in SCOPe 2.07: d2xsoi1, d2xsoi2
Chain 'J':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d2xsoj_
Chain 'K':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
Domains in SCOPe 2.07: d2xsok1, d2xsok2
Chain 'L':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d2xsol_
Chain 'M':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
Domains in SCOPe 2.07: d2xsom1, d2xsom2
Chain 'N':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d2xson_
Chain 'O':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
Domains in SCOPe 2.07: d2xsoo1, d2xsoo2
Chain 'P':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d2xsop_
Chain 'Q':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
Domains in SCOPe 2.07: d2xsoq1, d2xsoq2
Chain 'R':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d2xsor_
Chain 'S':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
Domains in SCOPe 2.07: d2xsos1, d2xsos2
Chain 'T':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d2xsot_
Chain 'U':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
Domains in SCOPe 2.07: d2xsou1, d2xsou2
Chain 'V':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d2xsov_
Chain 'W':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
Domains in SCOPe 2.07: d2xsow1, d2xsow2
Chain 'X':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d2xsox_
Heterogens: FES, FE2, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>2xsoA (A:)
mssaikevqgapvkwvtnwtpeairglvdqekglldpriyadqslyelelervfgrswll
lgheshvpetgdflatymgedpvvmvrqkdksikvflnqcrhrgmricrsdagnakaftc
syhgwaydiagklvnvpfekeafcdkkegdcgfdkaewgplqarvatykglvfanwdvqa
pdletylgdarpymdvmldrtpagtvaiggmqkwvipcnwkfaaeqfcsdmyhagttthl
sgilagippemdlsqaqiptkgnqfraawgghgsgwyvdepgsllavmgpkvtqywtegp
aaelaeqrlghtgmpvrrmvgqhmtifptcsflpamnniriwhprgpneievwaftlvda
dapaeikeeyrrhnirnfsaggvfeqddgenwveiqkglrgykaksqplnaqmglgrsqt
ghpdfpgnvgyvyaeeaargmyhhwmrmmsepswatlkp