PDB entry 2wks

View 2wks on RCSB PDB site
Description: structure of helicobacter pylori type II dehydroquinase with a new carbasugar-thiophene inhibitor.
Class: lyase
Keywords: aromatic amino acid biosynthesis, lyase, shikimic acid pathway, 3-dehydroquinate dehydratase
Deposited on 2009-06-17, released 2009-11-24
The last revision prior to the SCOPe 2.04 freeze date was dated 2011-07-06, with a file datestamp of 2011-07-01.
Experiment type: XRAY
Resolution: 2.95 Å
R-factor: 0.20742
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3-dehydroquinate dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2wksa_
  • Chain 'B':
    Compound: 3-dehydroquinate dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2wksb_
  • Chain 'C':
    Compound: 3-dehydroquinate dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2wksc_
  • Chain 'D':
    Compound: 3-dehydroquinate dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2wksd_
  • Chain 'E':
    Compound: 3-dehydroquinate dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2wkse_
  • Chain 'F':
    Compound: 3-dehydroquinate dehydratase
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2wksf_
  • Heterogens: CB6, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2wksA (A:)
mkilviqgpnlnmlghrdprlygmvtldqiheimqtfvkqgnldveleffqtnfegeiid
kiqesvgsdyegiiinpgafshtsiaiadaimlagkpvievhltniqareefrknsytga
acggvimgfgplgynmalmamvnilaemkafqeaqknnpnnpinnqk

    Sequence, based on observed residues (ATOM records): (download) 
    >2wksA (A:)
mkilviqgpnlnmlghrdprlygmvtldqiheimqtfvkqgnldveleffqtnfegeiid
kiqesvgsdyegiiinpgafshtsiaiadaimlagkpvievhltniqareefrknsytga
acggvimgfgplgynmalmamvnilaemkafqe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2wksB (B:)
mkilviqgpnlnmlghrdprlygmvtldqiheimqtfvkqgnldveleffqtnfegeiid
kiqesvgsdyegiiinpgafshtsiaiadaimlagkpvievhltniqareefrknsytga
acggvimgfgplgynmalmamvnilaemkafqeaqknnpnnpinnqk

    Sequence, based on observed residues (ATOM records): (download) 
    >2wksB (B:)
mkilviqgpnlnmlghrdprlygmvtldqiheimqtfvkqgnldveleffqtnfegeiid
kiqesvgsdyegiiinpgafshtsiaiadaimlagkpvievhltniqareefrknsytga
acggvimgfgplgynmalmamvnilaemkafqe

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2wksC (C:)
mkilviqgpnlnmlghrdprlygmvtldqiheimqtfvkqgnldveleffqtnfegeiid
kiqesvgsdyegiiinpgafshtsiaiadaimlagkpvievhltniqareefrknsytga
acggvimgfgplgynmalmamvnilaemkafqeaqknnpnnpinnqk

    Sequence, based on observed residues (ATOM records): (download) 
    >2wksC (C:)
mkilviqgpnlnmlghrdprlygmvtldqiheimqtfvkqgnldveleffqtnfegeiid
kiqesvgsdyegiiinpgafshtsiaiadaimlagkpvievhltniqareefrknsytga
acggvimgfgplgynmalmamvnilaemkafqe

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2wksD (D:)
mkilviqgpnlnmlghrdprlygmvtldqiheimqtfvkqgnldveleffqtnfegeiid
kiqesvgsdyegiiinpgafshtsiaiadaimlagkpvievhltniqareefrknsytga
acggvimgfgplgynmalmamvnilaemkafqeaqknnpnnpinnqk

    Sequence, based on observed residues (ATOM records): (download) 
    >2wksD (D:)
mkilviqgpnlnmlghrdprlygmvtldqiheimqtfvkqgnldveleffqtnfegeiid
kiqesvgsdyegiiinpgafshtsiaiadaimlagkpvievhltniqareefrknsytga
acggvimgfgplgynmalmamvnilaemkafqe

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2wksE (E:)
mkilviqgpnlnmlghrdprlygmvtldqiheimqtfvkqgnldveleffqtnfegeiid
kiqesvgsdyegiiinpgafshtsiaiadaimlagkpvievhltniqareefrknsytga
acggvimgfgplgynmalmamvnilaemkafqeaqknnpnnpinnqk

    Sequence, based on observed residues (ATOM records): (download) 
    >2wksE (E:)
mkilviqgpnlnmlghrdprlygmvtldqiheimqtfvkqgnldveleffqtnfegeiid
kiqesvgsdyegiiinpgafshtsiaiadaimlagkpvievhltniqareefrknsytga
acggvimgfgplgynmalmamvnilaemkafqe

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2wksF (F:)
mkilviqgpnlnmlghrdprlygmvtldqiheimqtfvkqgnldveleffqtnfegeiid
kiqesvgsdyegiiinpgafshtsiaiadaimlagkpvievhltniqareefrknsytga
acggvimgfgplgynmalmamvnilaemkafqeaqknnpnnpinnqk

    Sequence, based on observed residues (ATOM records): (download) 
    >2wksF (F:)
mkilviqgpnlnmlghrdprlygmvtldqiheimqtfvkqgnldveleffqtnfegeiid
kiqesvgsdyegiiinpgafshtsiaiadaimlagkpvievhltniqareefrknsytga
acggvimgfgplgynmalmamvnilaemkafqe