PDB entry 2vir

View 2vir on RCSB PDB site
Description: influenza virus hemagglutinin complexed with a neutralizing antibody
Class: complex (hemagglutinin/immmunoglobulin)
Keywords: complex (hemagglutinin/immmunoglobulin), glycoprotein
Deposited on 1997-12-22, released 1998-04-29
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.25 Å
R-factor: 0.198
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: immunoglobulin (igg1, lambda)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • GB AAA39089 (0-209)
    Domains in SCOPe 2.07: d2vira1, d2vira2
  • Chain 'B':
    Compound: immunoglobulin (igg1, lambda)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • GB AAD00000 (0-220)
      • conflict (2)
      • conflict (4)
      • conflict (27)
      • conflict (29)
      • conflict (31)
      • conflict (62)
      • conflict (68)
      • conflict (82)
      • conflict (91)
      • insertion (97-99)
      • conflict (101-102)
      • insertion (104-109)
      • conflict (116)
      • conflict (121)
      • conflict (134)
    Domains in SCOPe 2.07: d2virb1, d2virb2
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/X-31(H3N2)) [TaxId:132504]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03437 (Start-281)
      • modified residue (53)
      • modified residue (137)
      • modified residue (257)
    Domains in SCOPe 2.07: d2virc_
  • Heterogens: ZN

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2virA (A:)
qavvtqesalttspgetvtltcrsstgavttsnyanwvqekpdhlftgliggtnnrapgv
parfsgsligdkaaltitgaqtedeaiyfcalwysnhwvfgggtkltvlgqpksspsvtl
fppsseeletnkatlvctitdfypgvvtvdwkvdgtpvtqgmettqpskqsnnkymassy
ltltarawerhssyscqvtheghtveksls

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2virB (B:)
qvqlkesgpglvapsqslsitctvsgfllisngvhwvrqppgkglewlgviwaggntnyn
salmsrvsiskdnsksqvflkmkslqtddtamyycardfydydvfyyamdywgqgtsvtv
ssakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlq
sdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2virC (C:)
titddqievtdatelvqssstgkicnnphrildgidctlidallgdphcdvfqdetwdlf
verskafsncypydvpdyaslrslvassgtlefitegftwtgvtqnggsnackrgpgsgf
fsrlnwltksgstypvldvtmpnndnfdklyiwgihhpstnqeqtslyvqasgrvtvstr
rsqqtiipnigsrpwvrglssrisiywtivkpgdvlvinsngnliaprgyfkmrtgkssi
mrsdapidtcisecitpdgsipndkpfqnvnkitygacpkyv

    Sequence, based on observed residues (ATOM records): (download) 
    >2virC (C:)
vqssstgkicnnphrildgidctlidallgdphcdvfqdetwdlfverskafsncypydv
pdyaslrslvassgtlefitegftwtgvtqnggsnackrgpgsgffsrlnwltksgstyp
vldvtmpnndnfdklyiwgihhpstnqeqtslyvqasgrvtvstrrsqqtiipnigsrpw
vrglssrisiywtivkpgdvlvinsngnliaprgyfkmrtgkssimrsdapidtciseci
tpdgsipndkpfqnvnkitygacpkyv