PDB entry 2seb
View 2seb on RCSB PDB site
Description: x-ray crystal structure of hla-dr4 complexed with a peptide from human collagen II
Class: complex (MHC class II/superantigen)
Keywords: COMPLEX (MHC CLASS II-SUPERANTIGEN), COMPLEX (MHC CLASS II-SUPERANTIGEN) complex
Deposited on
1997-10-16, released
1998-01-28
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-07-04.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hla class II histocompatibility antigen
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2seba1, d2seba2 - Chain 'B':
Compound: hla class II histocompatibility antigen
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2sebb1, d2sebb2 - Chain 'D':
Compound: enterotoxin type b
Species: Staphylococcus aureus [TaxId:1280]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2sebd1, d2sebd2 - Chain 'E':
Compound: peptide from collagen II
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Heterogens: NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2sebA (A:)
ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
d
Sequence, based on observed residues (ATOM records): (download)
>2sebA (A:)
ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2sebB (B:)
gdtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaey
wnsqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypaktqplqhhnllvcsvn
gfypgsievrwfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpsl
tspltvewrars
Sequence, based on observed residues (ATOM records): (download)
>2sebB (B:)
dtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaeyw
nsqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypanllvcsvngfypgsiev
rwfrngqeektgvvstgliqngdwtfqtlvmletvevytcqvehpsltspltvewra
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2sebD (D:)
esqpdpkpdelhksskftglmenmkvlyddnhvsainvksidqflyfdliysikdtklgn
ydnvrvefknkdladkykdkyvdvfganyyyqcyfskktndinshqtdkrktcmyggvte
hngnqldkyrsitvrvfedgknllsfdvqtnkkkvtaqeldyltrhylvknkklyefnns
pyetgyikfienensfwydmmpapgdkfdqskylmmyndnkmvdskdvkievylttkkk
Sequence, based on observed residues (ATOM records): (download)
>2sebD (D:)
sqpdpkpdelhksskftglmenmkvlyddnhvsainvksidqflyfdliysikydnvrve
fknkdladkykdkyvdvfganyyyqcyfskrktcmyggvtehngnqldkyrsitvrvfed
gknllsfdvqtnkkkvtaqeldyltrhylvknkklyefnnspyetgyikfienensfwyd
mmpapgdkfdqskylmmyndnkmvdskdvkievyltt
- Chain 'E':
No sequence available.