PDB entry 2seb

View 2seb on RCSB PDB site
Description: x-ray crystal structure of hla-dr4 complexed with a peptide from human collagen II
Class: complex (MHC class II/superantigen)
Keywords: COMPLEX (MHC CLASS II-SUPERANTIGEN), COMPLEX (MHC CLASS II-SUPERANTIGEN) complex
Deposited on 1997-10-16, released 1998-01-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hla class II histocompatibility antigen
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2seba1, d2seba2
  • Chain 'B':
    Compound: hla class II histocompatibility antigen
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2sebb1, d2sebb2
  • Chain 'D':
    Compound: enterotoxin type b
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2sebd1, d2sebd2
  • Chain 'E':
    Compound: peptide from collagen II
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02458 (1-10)
      • conflict (6)
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2sebA (A:)
ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
d

    Sequence, based on observed residues (ATOM records): (download) 
    >2sebA (A:)
ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2sebB (B:)
gdtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaey
wnsqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypaktqplqhhnllvcsvn
gfypgsievrwfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpsl
tspltvewrars

    Sequence, based on observed residues (ATOM records): (download) 
    >2sebB (B:)
dtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaeyw
nsqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypanllvcsvngfypgsiev
rwfrngqeektgvvstgliqngdwtfqtlvmletvevytcqvehpsltspltvewra

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2sebD (D:)
esqpdpkpdelhksskftglmenmkvlyddnhvsainvksidqflyfdliysikdtklgn
ydnvrvefknkdladkykdkyvdvfganyyyqcyfskktndinshqtdkrktcmyggvte
hngnqldkyrsitvrvfedgknllsfdvqtnkkkvtaqeldyltrhylvknkklyefnns
pyetgyikfienensfwydmmpapgdkfdqskylmmyndnkmvdskdvkievylttkkk

    Sequence, based on observed residues (ATOM records): (download) 
    >2sebD (D:)
sqpdpkpdelhksskftglmenmkvlyddnhvsainvksidqflyfdliysikydnvrve
fknkdladkykdkyvdvfganyyyqcyfskrktcmyggvtehngnqldkyrsitvrvfed
gknllsfdvqtnkkkvtaqeldyltrhylvknkklyefnnspyetgyikfienensfwyd
mmpapgdkfdqskylmmyndnkmvdskdvkievyltt

  • Chain 'E':
    No sequence available.