PDB entry 2q60

View 2q60 on RCSB PDB site
Description: Crystal structure of the ligand binding domain of polyandrocarpa misakiensis rxr in tetramer in absence of ligand
Class: transcription
Keywords: Nuclear receptor. RXR ligand binding domain, Apo-tetramer, TRANSCRIPTION
Deposited on 2007-06-04, released 2008-05-27
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.272
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: retinoid x receptor
    Species: Polyandrocarpa misakiensis [TaxId:7723]
    Gene: PmRXR
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UAF1 (23-End)
      • engineered (167)
      • engineered (177)
    Domains in SCOPe 2.07: d2q60a_
  • Chain 'B':
    Compound: retinoid x receptor
    Species: Polyandrocarpa misakiensis [TaxId:7723]
    Gene: PmRXR
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UAF1
      • engineered (167)
      • engineered (177)
    Domains in SCOPe 2.07: d2q60b_
  • Chain 'C':
    Compound: retinoid x receptor
    Species: Polyandrocarpa misakiensis [TaxId:7723]
    Gene: PmRXR
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UAF1
      • engineered (167)
      • engineered (177)
    Domains in SCOPe 2.07: d2q60c_
  • Chain 'D':
    Compound: retinoid x receptor
    Species: Polyandrocarpa misakiensis [TaxId:7723]
    Gene: PmRXR
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UAF1 (23-End)
      • engineered (167)
      • engineered (177)
    Domains in SCOPe 2.07: d2q60d_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2q60A (A:)
mgsshhhhhhssglvprgshmasnpnddmpvdkileaelisdpkveqvvpfeqvnendpv
snickaadrqlvtlvewakriphfsslpledqvillragwnelliasfshrsidvkdsil
lasglhvhrhsahqagvgpifdrvltelvskmrdmmmdktelgclravvlfnpdvknpsd
sahieslrekvyasleaycrskypdqpgrfaklllrlpalrsiglkclehlfffkligdt
pidkflmnmlettsdfpv

    Sequence, based on observed residues (ATOM records): (download) 
    >2q60A (A:)
npnddmpvdkileaeliskaadrqlvtlvewakriphfsslpledqvillragwnellia
sfshrsidvkdsillasglhvhrhsahqagvgpifdrvltelvskmrdmmmdktelgclr
avvlfnpdvknpsdsahieslrekvyasleaycrskypdqpgrfaklllrlpalrsiglk
clehlfffkligdtpidk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2q60B (B:)
mgsshhhhhhssglvprgshmasnpnddmpvdkileaelisdpkveqvvpfeqvnendpv
snickaadrqlvtlvewakriphfsslpledqvillragwnelliasfshrsidvkdsil
lasglhvhrhsahqagvgpifdrvltelvskmrdmmmdktelgclravvlfnpdvknpsd
sahieslrekvyasleaycrskypdqpgrfaklllrlpalrsiglkclehlfffkligdt
pidkflmnmlettsdfpv

    Sequence, based on observed residues (ATOM records): (download) 
    >2q60B (B:)
ddmpvdkileaelisdckaadrqlvtlvewakriphfsslpledqvillragwnellias
fshrsidvkdsillasglhvhrhsahqagvgpifdrvltelvskmrdmmmdktelgclra
vvlfnpdvknpsdsahieslrekvyasleaycrskypdqpgrfaklllrlpalrsiglkc
lehlfffkligdtpidkf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2q60C (C:)
mgsshhhhhhssglvprgshmasnpnddmpvdkileaelisdpkveqvvpfeqvnendpv
snickaadrqlvtlvewakriphfsslpledqvillragwnelliasfshrsidvkdsil
lasglhvhrhsahqagvgpifdrvltelvskmrdmmmdktelgclravvlfnpdvknpsd
sahieslrekvyasleaycrskypdqpgrfaklllrlpalrsiglkclehlfffkligdt
pidkflmnmlettsdfpv

    Sequence, based on observed residues (ATOM records): (download) 
    >2q60C (C:)
nddmpvdkileaelisdpnickaadrqlvtlvewakriphfsslpledqvillragwnel
liasfshrsidvkdsillasglhvhrhsahqagvgpifdrvltelvskmrdmmmdktelg
clravvlfnpdvknpsdsahieslrekvyasleaycrskypdqpgrfaklllrlpalrsi
glkclehlfffkligdtpidkfl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2q60D (D:)
mgsshhhhhhssglvprgshmasnpnddmpvdkileaelisdpkveqvvpfeqvnendpv
snickaadrqlvtlvewakriphfsslpledqvillragwnelliasfshrsidvkdsil
lasglhvhrhsahqagvgpifdrvltelvskmrdmmmdktelgclravvlfnpdvknpsd
sahieslrekvyasleaycrskypdqpgrfaklllrlpalrsiglkclehlfffkligdt
pidkflmnmlettsdfpv

    Sequence, based on observed residues (ATOM records): (download) 
    >2q60D (D:)
npnddmpvdkileaelisdaadrqlvtlvewakriphfsslpledqvillragwnellia
sfshrsidvkdsillasglhvhrhsahqagvgpifdrvltelvskmrdmmmdktelgclr
avvlfnpdvknpsdsahieslrekvyasleaycrskypdqpgrfaklllrlpalrsiglk
clehlfffkligdtpid