PDB entry 2q60
View 2q60 on RCSB PDB site
Description: Crystal structure of the ligand binding domain of polyandrocarpa misakiensis rxr in tetramer in absence of ligand
Class: transcription
Keywords: Nuclear receptor. RXR ligand binding domain, Apo-tetramer, TRANSCRIPTION
Deposited on
2007-06-04, released
2008-05-27
The last revision prior to the SCOPe 2.03 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.272
AEROSPACI score: 0.2
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: retinoid x receptor
Species: Polyandrocarpa misakiensis [TaxId:7723]
Gene: PmRXR
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UAF1 (23-End)
- engineered (167)
- engineered (177)
Domains in SCOPe 2.03: d2q60a_ - Chain 'B':
Compound: retinoid x receptor
Species: Polyandrocarpa misakiensis [TaxId:7723]
Gene: PmRXR
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UAF1
- engineered (167)
- engineered (177)
Domains in SCOPe 2.03: d2q60b_ - Chain 'C':
Compound: retinoid x receptor
Species: Polyandrocarpa misakiensis [TaxId:7723]
Gene: PmRXR
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UAF1
- engineered (167)
- engineered (177)
Domains in SCOPe 2.03: d2q60c_ - Chain 'D':
Compound: retinoid x receptor
Species: Polyandrocarpa misakiensis [TaxId:7723]
Gene: PmRXR
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UAF1 (23-End)
- engineered (167)
- engineered (177)
Domains in SCOPe 2.03: d2q60d_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2q60A (A:)
mgsshhhhhhssglvprgshmasnpnddmpvdkileaelisdpkveqvvpfeqvnendpv
snickaadrqlvtlvewakriphfsslpledqvillragwnelliasfshrsidvkdsil
lasglhvhrhsahqagvgpifdrvltelvskmrdmmmdktelgclravvlfnpdvknpsd
sahieslrekvyasleaycrskypdqpgrfaklllrlpalrsiglkclehlfffkligdt
pidkflmnmlettsdfpv
Sequence, based on observed residues (ATOM records): (download)
>2q60A (A:)
npnddmpvdkileaeliskaadrqlvtlvewakriphfsslpledqvillragwnellia
sfshrsidvkdsillasglhvhrhsahqagvgpifdrvltelvskmrdmmmdktelgclr
avvlfnpdvknpsdsahieslrekvyasleaycrskypdqpgrfaklllrlpalrsiglk
clehlfffkligdtpidk
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2q60B (B:)
mgsshhhhhhssglvprgshmasnpnddmpvdkileaelisdpkveqvvpfeqvnendpv
snickaadrqlvtlvewakriphfsslpledqvillragwnelliasfshrsidvkdsil
lasglhvhrhsahqagvgpifdrvltelvskmrdmmmdktelgclravvlfnpdvknpsd
sahieslrekvyasleaycrskypdqpgrfaklllrlpalrsiglkclehlfffkligdt
pidkflmnmlettsdfpv
Sequence, based on observed residues (ATOM records): (download)
>2q60B (B:)
ddmpvdkileaelisdckaadrqlvtlvewakriphfsslpledqvillragwnellias
fshrsidvkdsillasglhvhrhsahqagvgpifdrvltelvskmrdmmmdktelgclra
vvlfnpdvknpsdsahieslrekvyasleaycrskypdqpgrfaklllrlpalrsiglkc
lehlfffkligdtpidkf
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2q60C (C:)
mgsshhhhhhssglvprgshmasnpnddmpvdkileaelisdpkveqvvpfeqvnendpv
snickaadrqlvtlvewakriphfsslpledqvillragwnelliasfshrsidvkdsil
lasglhvhrhsahqagvgpifdrvltelvskmrdmmmdktelgclravvlfnpdvknpsd
sahieslrekvyasleaycrskypdqpgrfaklllrlpalrsiglkclehlfffkligdt
pidkflmnmlettsdfpv
Sequence, based on observed residues (ATOM records): (download)
>2q60C (C:)
nddmpvdkileaelisdpnickaadrqlvtlvewakriphfsslpledqvillragwnel
liasfshrsidvkdsillasglhvhrhsahqagvgpifdrvltelvskmrdmmmdktelg
clravvlfnpdvknpsdsahieslrekvyasleaycrskypdqpgrfaklllrlpalrsi
glkclehlfffkligdtpidkfl
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2q60D (D:)
mgsshhhhhhssglvprgshmasnpnddmpvdkileaelisdpkveqvvpfeqvnendpv
snickaadrqlvtlvewakriphfsslpledqvillragwnelliasfshrsidvkdsil
lasglhvhrhsahqagvgpifdrvltelvskmrdmmmdktelgclravvlfnpdvknpsd
sahieslrekvyasleaycrskypdqpgrfaklllrlpalrsiglkclehlfffkligdt
pidkflmnmlettsdfpv
Sequence, based on observed residues (ATOM records): (download)
>2q60D (D:)
npnddmpvdkileaelisdaadrqlvtlvewakriphfsslpledqvillragwnellia
sfshrsidvkdsillasglhvhrhsahqagvgpifdrvltelvskmrdmmmdktelgclr
avvlfnpdvknpsdsahieslrekvyasleaycrskypdqpgrfaklllrlpalrsiglk
clehlfffkligdtpid