PDB entry 2gdq

View 2gdq on RCSB PDB site
Description: Crystal structure of mandelate racemase/muconate lactonizing enzyme from Bacillus subtilis at 1.8 A resolution
Class: structural genomics, unknown function
Keywords: mandelate racemase/muconate lactonizing enzyme, TIM-barrel, enolase, octamer, Structural Genomics, PSI, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, UNKNOWN FUNCTION
Deposited on 2006-03-16, released 2006-04-04
The last revision prior to the SCOPe 2.04 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.2
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: yitF
    Species: BACILLUS SUBTILIS [TaxId:224308]
    Gene: yitF
    Database cross-references and differences (RAF-indexed):
    • Uniprot O06741 (4-373)
      • cloning artifact (2-3)
      • cloning artifact (374)
    Domains in SCOPe 2.04: d2gdqa1, d2gdqa2
  • Chain 'B':
    Compound: yitF
    Species: BACILLUS SUBTILIS [TaxId:224308]
    Gene: yitF
    Database cross-references and differences (RAF-indexed):
    • Uniprot O06741 (4-373)
      • cloning artifact (2-3)
      • cloning artifact (374)
    Domains in SCOPe 2.04: d2gdqb1, d2gdqb2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2gdqA (A:)
malvkivrietfplfhrlekpygdangfkryrtcyliriitesgidgwgecvdwlpalhv
gftkriipfllgkqagsrlslvrtiqkwhqraasavsmalteiaakaadcsvcelwggry
reeipvyasfqsysdspqwisrsvsnveaqlkkgfeqikvkiggtsfkedvrhinalqht
agssitmildanqsydaaaafkweryfsewtnigwleeplpfdqpqdyamlrsrlsvpva
ggenmkgpaqyvpllsqrcldiiqpdvmhvngidefrdclqlaryfgvrasahaydgsls
rlyalfaqaclppwskmkndhiepiewdvmenpftdlvslqpskgmvhipkgkgigtein
meivnrykwdgsayeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2gdqA (A:)
lvkivrietfplfhrlekpygdangfkryrtcyliriitesgidgwgecvdwlpalhvgf
tkriipfllgkqagsrlslvrtiqkwhqraasavsmalteiaakaadcsvcelwggryre
eipvyasfqsysdspqwisrsvsnveaqlkkgfeqikvkiggtsfkedvrhinalqhtag
ssitmildanqsydaaaafkweryfsewtnigwleeplpfdqpqdyamlrsrlsvpvagg
enmkgpaqyvpllsqrcldiiqpdvmhvngidefrdclqlaryfgvrasahaydgslsrl
yalfaqaclppwskmkndhiepiewdvmenpftdlvslqpskgmvhipkgkgigteinme
ivnrykwdgsaye

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2gdqB (B:)
malvkivrietfplfhrlekpygdangfkryrtcyliriitesgidgwgecvdwlpalhv
gftkriipfllgkqagsrlslvrtiqkwhqraasavsmalteiaakaadcsvcelwggry
reeipvyasfqsysdspqwisrsvsnveaqlkkgfeqikvkiggtsfkedvrhinalqht
agssitmildanqsydaaaafkweryfsewtnigwleeplpfdqpqdyamlrsrlsvpva
ggenmkgpaqyvpllsqrcldiiqpdvmhvngidefrdclqlaryfgvrasahaydgsls
rlyalfaqaclppwskmkndhiepiewdvmenpftdlvslqpskgmvhipkgkgigtein
meivnrykwdgsayeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2gdqB (B:)
lvkivrietfplfhrlekpygdangfkryrtcyliriitesgidgwgecvdwlpalhvgf
tkriipfllgkqagsrlslvrtiqkwhqraasavsmalteiaakaadcsvcelwggryre
eipvyasfqsysdspqwisrsvsnveaqlkkgfeqikvkiggtsfkedvrhinalqhtag
ssitmildanqsydaaaafkweryfsewtnigwleeplpfdqpqdyamlrsrlsvpvagg
enmkgpaqyvpllsqrcldiiqpdvmhvngidefrdclqlaryfgvrasahaydgslsrl
yalfaqaclppwskmkndhiepiewdvmenpftdlvslqpskgmvhipkgkgigteinme
ivnrykwdgsaye