PDB entry 2dyp

View 2dyp on RCSB PDB site
Description: Crystal Structure of LILRB2(LIR2/ILT4/CD85d) complexed with HLA-G
Class: immune system
Keywords: Immunoglobulin-like, IMMUNE SYSTEM
Deposited on 2006-09-15, released 2006-11-07
The last revision prior to the SCOPe 2.04 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.233
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HLA class I histocompatibility antigen, alpha chain G
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P17693 (Start-276)
      • engineered (42)
    Domains in SCOPe 2.04: d2dypa1, d2dypa2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • initiating methionine (0)
    Domains in SCOPe 2.04: d2dypb_
  • Chain 'C':
    Compound: 9 Mer Peptide From Histone H2A.x
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Leukocyte immunoglobulin-like receptor subfamily B member 2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8N423
      • see remark 999 (60)
    Domains in SCOPe 2.04: d2dypd1, d2dypd2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2dypA (A:)
mgshsmryfsaavsrpgrgeprfiamgyvddtqfvrfdsdsasprmeprapwveqegpey
weeetrntkahaqtdrmnlqtlrgyynqseasshtlqwmigcdlgsdgrllrgyeqyayd
gkdylalnedlrswtaadtaaqiskrkceaanvaeqrraylegtcvewlhrylengkeml
qradppkthvthhpvfdyeatlrcwalgfypaeiiltwqrdgedqtqdvelvetrpagdg
tfqkwaavvvpsgeeqrytchvqheglpeplmlrwkq

    Sequence, based on observed residues (ATOM records): (download) 
    >2dypA (A:)
shsmryfsaavsrpgrgeprfiamgyvddtqfvrfdsdsasprmeprapwveqegpeywe
eetrntkahaqtdrmnlqtlrgyynqseasshtlqwmigcdlgsdgrllrgyeqyaydgk
dylalnedlrswtaadtaaqiskrkceaanvaeqrraylegtcvewlhrylengkemlqr
adppkthvthhpvfdyeatlrcwalgfypaeiiltwqrdgedqtqdvelvetrpagdgtf
qkwaavvvpsgeeqrytchvqheglpeplmlrwkq

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2dypB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2dypD (D:)
gtipkptlwaepdsvitqgspvtlscqgsleaqeyrlyrekksaswitrirpelvkngqf
ripsitwehtgrygcqyysrarwselsdplvlvmtgaypkptlsaqpspvvtsggrvtlq
cesqvafggfilckegedehpqclnsqphargssraifsvgpvspnrrwshrcygydlns
pyvwsspsdllellvp

    Sequence, based on observed residues (ATOM records): (download) 
    >2dypD (D:)
ipkptlwaepdsvitqgspvtlscqgsleaqeyrlyrekksaswitrirpelvkngqfri
psitwehtgrygcqyysrarwselsdplvlvmtgaypkptlsaqpspvvtsggrvtlqce
sqvafggfilckeehpqclnsqssraifsvgpvspnrrwshrcygydlnspyvwsspsdl
lellv