PDB entry 2d6f

View 2d6f on RCSB PDB site
Description: Crystal structure of Glu-tRNA(Gln) amidotransferase in the complex with tRNA(Gln)
Class: ligase/RNA
Keywords: ligase, RNA
Deposited on 2005-11-13, released 2006-07-11
The last revision prior to the SCOP 1.75 freeze date was dated 2006-07-11, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.15 Å
R-factor: 0.23
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamyl-tRNA(Gln) amidotransferase subunit D
    Species: Methanobacterium thermoformicicum
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2d6fa1, d2d6fa2
  • Chain 'B':
    Compound: Glutamyl-tRNA(Gln) amidotransferase subunit D
    Species: Methanobacterium thermoformicicum
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2d6fb1, d2d6fb2
  • Chain 'C':
    Compound: Glutamyl-tRNA(Gln) amidotransferase subunit E
    Species: Methanobacterium thermoformicicum
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2d6fc1, d2d6fc2, d2d6fc3
  • Chain 'D':
    Compound: Glutamyl-tRNA(Gln) amidotransferase subunit E
    Species: Methanobacterium thermoformicicum
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2d6fd1, d2d6fd2, d2d6fd3
  • Chain 'E':
    Compound: tRNA
  • Chain 'F':
    Compound: tRNA
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2d6fA (A:)
msyqgrarkflesasidvgdmvlvekpdvtyegmvldraddaddrhivlklengynigve
isdariellekgseprielppveaaedpelpdvsiistggtvasiidyrtgavhpaftad
dllranpelldianirgravfnilsenmkpeywvetaravygeikdgadgvvvahgtdtm
hytsaalsfmlrtpvpvvftgaqrssdrpssdaslniqcsvraatseiaevtvcmhatmd
dlschlhrgvkvrkmhtsrrdtfrsmnalplaevtpdgikileenyrkrgsdelelsdrv
eervafiksypgispdiikwhldegyrgiviegtglghcpdtlipvigeahdmgvpvamt
sqclngrvnmnvystgrrllqagvipcddmlpevayvkmcwvlgqtddpemaremmreni
ageinertsiayfrg

    Sequence, based on observed residues (ATOM records): (download) 
    >2d6fA (A:)
syqgrarkflesasidvgdmvlvekpdvtyegmvldraddaddrhivlklengynigvei
sdariellekgsaaedpelpdvsiistggtvasiidyrtgavhpaftaddllranpelld
ianirgravfnilsenmkpeywvetaravygeikdgadgvvvahgtdtmhytsaalsfml
rtpvpvvftgaqrssdrpssdaslniqcsvraatseiaevtvcmhatmddlschlhrgvk
vrkmhtsrrdtfrsmnalplaevtpdgikileenyrkrgsdelelsdrveervafiksyp
gispdiikwhldegyrgiviegtglghcpdtlipvigeahdmgvpvamtsqclngrvnmn
vystgrrllqagvipcddmlpevayvkmcwvlgqtddpemaremmreniageinertsia
yfrg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2d6fB (B:)
msyqgrarkflesasidvgdmvlvekpdvtyegmvldraddaddrhivlklengynigve
isdariellekgseprielppveaaedpelpdvsiistggtvasiidyrtgavhpaftad
dllranpelldianirgravfnilsenmkpeywvetaravygeikdgadgvvvahgtdtm
hytsaalsfmlrtpvpvvftgaqrssdrpssdaslniqcsvraatseiaevtvcmhatmd
dlschlhrgvkvrkmhtsrrdtfrsmnalplaevtpdgikileenyrkrgsdelelsdrv
eervafiksypgispdiikwhldegyrgiviegtglghcpdtlipvigeahdmgvpvamt
sqclngrvnmnvystgrrllqagvipcddmlpevayvkmcwvlgqtddpemaremmreni
ageinertsiayfrg

    Sequence, based on observed residues (ATOM records): (download) 
    >2d6fB (B:)
syqgrarkflesasidvgdmvlvekpdvtyegmvldraddaddrhivlklengynigvei
sdariellekgsepedpelpdvsiistggtvasiidyrtgavhpaftaddllranpelld
ianirgravfnilsenmkpeywvetaravygeikdgadgvvvahgtdtmhytsaalsfml
rtpvpvvftgaqrssdrpssdaslniqcsvraatseiaevtvcmhatmddlschlhrgvk
vrkmhtsrrdtfrsmnalplaevtpdgikileenyrkrgsdelelsdrveervafiksyp
gispdiikwhldegyrgiviegtglghcpdtlipvigeahdmgvpvamtsqclngrvnmn
vystgrrllqagvipcddmlpevayvkmcwvlgqtddpemaremmreniageinertsia
yfrg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2d6fC (C:)
mdwekvglkmgleihqqldtesklfcpcrteltdsepdhdivrnlrptqselgkfdraaf
eeamrklhfhyenyheetclveadeepphplnpealeiavtialllnmrvvdefhtmrkq
vidgsntggfqrtglvatdghletpqgtvkienlcleedaarriretgdgvvfrldrlgi
plveittdpsmsdpqqlrevayqigqilrstrvkrglgtirqdlnisirdgarvevkgvq
dldlipeiverevkrqlslveirdtlqergavvedkifdvsevfadtesriissaesvla
vklrgfdgligveiqpgrrlgtemadyakkrgvsgifhtdelpaygiteeevrglrdavg
asqgdavvmvahervtaenalrevirraemaiqgvpeetrkalpdgntqylrplptssrm
yletdiplfrieddllegirrnlpelpsekkerimrdyglsedlasqlvkrnlvdefeal
tefrvdttviasllaytlrelrreghdvdglgldelrdaikllevgkiskdalrdivacm
adeglaaedaarklnllllaedeiesiiqeivegnldmisergmgamgplmgqamgrlrg
radgkvvnrilrekiqerl

    Sequence, based on observed residues (ATOM records): (download) 
    >2d6fC (C:)
mdwekvglkmgleihqqldtesklfcpcrteltdsepdhdivrnlrptafeeamrklhfh
yenyheetclveadeepphplnpealeiavtialllnmrvvdefhtmrkqvidgsntggf
qrtglvatdghletpqgtvkienlcleedaarriretgdgvvfrldrlgiplveittdps
msdpqqlrevayqigqilrstrvkrglgtirqdlnisirdgarvevkgvqdldlipeive
revkrqlslveirdtlqergavvedkifdvsevfadtesriissaesvlavklrgfdgli
gveiqpgrrlgtemadyakkrgvsgifhtdelpaygiteeevrglrdavgasqgdavvmv
ahervtaenalrevirraemaiqgvpeetrkalpdgntqylrplptssrmyletdiplfr
ieddllegirrnlpelpsekkerimrdyglsedlasqlvkrnlvdefdttviasllaytl
relrr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2d6fD (D:)
mdwekvglkmgleihqqldtesklfcpcrteltdsepdhdivrnlrptqselgkfdraaf
eeamrklhfhyenyheetclveadeepphplnpealeiavtialllnmrvvdefhtmrkq
vidgsntggfqrtglvatdghletpqgtvkienlcleedaarriretgdgvvfrldrlgi
plveittdpsmsdpqqlrevayqigqilrstrvkrglgtirqdlnisirdgarvevkgvq
dldlipeiverevkrqlslveirdtlqergavvedkifdvsevfadtesriissaesvla
vklrgfdgligveiqpgrrlgtemadyakkrgvsgifhtdelpaygiteeevrglrdavg
asqgdavvmvahervtaenalrevirraemaiqgvpeetrkalpdgntqylrplptssrm
yletdiplfrieddllegirrnlpelpsekkerimrdyglsedlasqlvkrnlvdefeal
tefrvdttviasllaytlrelrreghdvdglgldelrdaikllevgkiskdalrdivacm
adeglaaedaarklnllllaedeiesiiqeivegnldmisergmgamgplmgqamgrlrg
radgkvvnrilrekiqerl

    Sequence, based on observed residues (ATOM records): (download) 
    >2d6fD (D:)
mdwekvglkmgleihqqldtesklfcpcrteltdsepdhdivrnlrptraafeeamrklh
fhyenyheetclveadeepphplnpealeiavtialllnmrvvdefhtmrkqvidgsntg
gfqrtglvatdghletpqgtvkienlcleedaarriretgdgvvfrldrlgiplveittd
psmsdpqqlrevayqigqilrstrvkrglgtirqdlnisirdgarvevkgvqdldlipei
verevkrqlslveirdtlqergavvedkifdvsevfadtesriissaesvlavklrgfdg
ligveiqpgrrlgtemadyakkrgvsgifhtdelpaygiteeevrglrdavgasqgdavv
mvahervtaenalrevirraemaiqgvpeetrkalpdgntqylrplptssrmyletdipl
frieddllegirrnlpelpsekkerimrdyglsedlasqlvkrnlvdefdttviasllay
tlrelrreghdvdglgldelrdaikllevgkiskdalrdiva

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.