PDB entry 2d1i

View 2d1i on RCSB PDB site
Description: Structure of human Atg4b
Class: hydrolase
Keywords: cysteine protease, autophagy, atg, apg, hydrolase
Deposited on 2005-08-24, released 2006-01-10
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.224
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cysteine protease APG4B
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2d1ia1
  • Chain 'B':
    Compound: Cysteine protease APG4B
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2d1ib_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2d1iA (A:)
gplgsmdaatltydtlrfaefedfpetsepvwilgrkysiftekdeilsdvasrlwftyr
knfpaiggtgptsdtgwgcmlrcgqmifaqalvcrhlgrdwrwtqrkrqpdsyfsvlnaf
idrkdsyysihqiaqmgvgegksigqwygpntvaqvlkklavfdtwsslavhiamdntvv
meeirrlcrtsvpcagatafpadsdrhcngfpagaevtnrpspwrplvlliplrlgltdi
neayvetlkhcfmmpqslgviggkpnsahyfigyvgeeliyldphttqpaveptdgcfip
desfhcqhppcrmsiaeldpsiavgffckteddfndwcqqvkklsllggalpmfelveqq
pshlacpdvlnlsldssdverlerffdsededfeilsl

    Sequence, based on observed residues (ATOM records): (download) 
    >2d1iA (A:)
tlrfaefedfpetsepvwilgrkysiftekdeilsdvasrlwftyrknfpaiggtgptsd
tgwgcmlrcgqmifaqalvcrhlgrdwrwtqrkrqpdsyfsvlnafidrkdsyysihqia
qmgvgegksigqwygpntvaqvlkklavfdtwsslavhiamdntvvmeeirrlcrtsvpc
apspwrplvlliplrlgltdineayvetlkhcfmmpqslgviggkpnsahyfigyvgeel
iyldphttqpaveptdgcfipdesfhcqhppcrmsiaeldpsiavgffckteddfndwcq
qvkklsllggalpmfelveqqpshlacpdvlnlsldssd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2d1iB (B:)
gplgsmdaatltydtlrfaefedfpetsepvwilgrkysiftekdeilsdvasrlwftyr
knfpaiggtgptsdtgwgcmlrcgqmifaqalvcrhlgrdwrwtqrkrqpdsyfsvlnaf
idrkdsyysihqiaqmgvgegksigqwygpntvaqvlkklavfdtwsslavhiamdntvv
meeirrlcrtsvpcagatafpadsdrhcngfpagaevtnrpspwrplvlliplrlgltdi
neayvetlkhcfmmpqslgviggkpnsahyfigyvgeeliyldphttqpaveptdgcfip
desfhcqhppcrmsiaeldpsiavgffckteddfndwcqqvkklsllggalpmfelveqq
pshlacpdvlnlsldssdverlerffdsededfeilsl

    Sequence, based on observed residues (ATOM records): (download) 
    >2d1iB (B:)
tlrfaefedfpetsepvwilgrkysiftekdeilsdvasrlwftyrknfpaiggtgptsd
tgwgcmlrcgqmifaqalvcrhlgrdwrwtqrkrqpdsyfsvlnafidrkdsyysihqia
qmgvgegksigqwygpntvaqvlkklavfdtwsslavhiamdntvvmeeirrlcrtsvpc
apspwrplvlliplrlgltdineayvetlkhcfmmpqslgviggkpnsahyfigyvgeel
iyldphttqpaveptdgcfipdesfhcqhppcrmsiaeldpsiavgffckteddfndwcq
qvkklsllggalpmfelveqqpshlacpdvlnlsldssd