PDB entry 1zmx

View 1zmx on RCSB PDB site
Description: Crystal structure of D. melanogaster deoxyribonucleoside kinase N64D mutant in complex with thymidine
Class: transferase
Keywords: Drosophila melanogaster, dnk, N64D mutant, TRANSFERASE
Deposited on 2005-05-11, released 2005-05-24
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.27
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: deoxynucleoside kinase
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: dnk
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9XZT6
      • engineered (63)
    Domains in SCOPe 2.07: d1zmxa_
  • Chain 'B':
    Compound: deoxynucleoside kinase
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: dnk
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9XZT6
      • engineered (63)
    Domains in SCOPe 2.07: d1zmxb_
  • Chain 'C':
    Compound: deoxynucleoside kinase
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: dnk
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9XZT6
      • engineered (63)
    Domains in SCOPe 2.07: d1zmxc_
  • Chain 'D':
    Compound: deoxynucleoside kinase
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: dnk
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9XZT6
      • engineered (63)
    Domains in SCOPe 2.07: d1zmxd_
  • Chain 'E':
    Compound: deoxynucleoside kinase
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: dnk
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9XZT6
      • engineered (63)
    Domains in SCOPe 2.07: d1zmxe_
  • Chain 'F':
    Compound: deoxynucleoside kinase
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: dnk
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9XZT6
      • engineered (63)
    Domains in SCOPe 2.07: d1zmxf_
  • Chain 'G':
    Compound: deoxynucleoside kinase
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: dnk
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9XZT6
      • engineered (63)
    Domains in SCOPe 2.07: d1zmxg_
  • Chain 'H':
    Compound: deoxynucleoside kinase
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: dnk
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9XZT6
      • engineered (63)
    Domains in SCOPe 2.07: d1zmxh_
  • Heterogens: SO4, THM

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1zmxA (A:)
maeaascarkgtkyaegtqpftvliegnigsgkttylnhfekykndiclltepvekwrnv
ngvdllelmykdpkkwampfqsyvtltmlqshtaptnkklkimersifsarycfvenmrr
ngsleqgmyntleewykfieesihvqadliiylrtspevayerirqrarseescvplkyl
qelhelhedwlihqrrpqsckvlvldadlnlenigteyqrsessifdais

    Sequence, based on observed residues (ATOM records): (download) 
    >1zmxA (A:)
tkyaegtqpftvliegnigsgkttylnhfekykndiclltepvekwrnvngvdllelmyk
dpkkwampfqsyvtltmlqshtaptnkklkimersifsarycfvenmrrngsleqgmynt
leewykfieesihvqadliiylrtspevayerirqrvplkylqelhelhedwlihqrrpq
sckvlvldad

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1zmxB (B:)
maeaascarkgtkyaegtqpftvliegnigsgkttylnhfekykndiclltepvekwrnv
ngvdllelmykdpkkwampfqsyvtltmlqshtaptnkklkimersifsarycfvenmrr
ngsleqgmyntleewykfieesihvqadliiylrtspevayerirqrarseescvplkyl
qelhelhedwlihqrrpqsckvlvldadlnlenigteyqrsessifdais

    Sequence, based on observed residues (ATOM records): (download) 
    >1zmxB (B:)
tkyaegtqpftvliegnigsgkttylnhfekykndiclltepvekwrnvngvdllelmyk
dpkkwampfqsyvtltmlqshtaptnkklkimersifsarycfvenmrrngsleqgmynt
leewykfieesihvqadliiylrtspevayerirqrvplkylqelhelhedwlihqckvl
vldad

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1zmxC (C:)
maeaascarkgtkyaegtqpftvliegnigsgkttylnhfekykndiclltepvekwrnv
ngvdllelmykdpkkwampfqsyvtltmlqshtaptnkklkimersifsarycfvenmrr
ngsleqgmyntleewykfieesihvqadliiylrtspevayerirqrarseescvplkyl
qelhelhedwlihqrrpqsckvlvldadlnlenigteyqrsessifdais

    Sequence, based on observed residues (ATOM records): (download) 
    >1zmxC (C:)
tkyaegtqpftvliegnigsgkttylnhfekykndiclltepvekwrnvngvdllelmyk
dpkkwampfqsyvtltmlqshtaptnkklkimersifsarycfvenmrrngsleqgmynt
leewykfieesihvqadliiylrtspevayerirqrcvplkylqelhelhedwlihqrrp
qsckvlvldad

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1zmxD (D:)
maeaascarkgtkyaegtqpftvliegnigsgkttylnhfekykndiclltepvekwrnv
ngvdllelmykdpkkwampfqsyvtltmlqshtaptnkklkimersifsarycfvenmrr
ngsleqgmyntleewykfieesihvqadliiylrtspevayerirqrarseescvplkyl
qelhelhedwlihqrrpqsckvlvldadlnlenigteyqrsessifdais

    Sequence, based on observed residues (ATOM records): (download) 
    >1zmxD (D:)
tkyaegtqpftvliegnigsgkttylnhfekykndiclltepvekwrnvngvdllelmyk
dpkkwampfqsyvtltmlqshtaptnkklkimersifsarycfvenmrrngsleqgmynt
leewykfieesihvqadliiylrtspevayerirqrvplkylqelhelhedwlihqckvl
vldad

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1zmxE (E:)
maeaascarkgtkyaegtqpftvliegnigsgkttylnhfekykndiclltepvekwrnv
ngvdllelmykdpkkwampfqsyvtltmlqshtaptnkklkimersifsarycfvenmrr
ngsleqgmyntleewykfieesihvqadliiylrtspevayerirqrarseescvplkyl
qelhelhedwlihqrrpqsckvlvldadlnlenigteyqrsessifdais

    Sequence, based on observed residues (ATOM records): (download) 
    >1zmxE (E:)
tkyaegtqpftvliegnigsgkttylnhfekykndiclltepvekwrnvngvdllelmyk
dpkkwampfqsyvtltmlqshtaptnkklkimersifsarycfvenmrrngsleqgmynt
leewykfieesihvqadliiylrtspevayerirqrvplkylqelhelhedwlihqrrpq
sckvlvldad

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1zmxF (F:)
maeaascarkgtkyaegtqpftvliegnigsgkttylnhfekykndiclltepvekwrnv
ngvdllelmykdpkkwampfqsyvtltmlqshtaptnkklkimersifsarycfvenmrr
ngsleqgmyntleewykfieesihvqadliiylrtspevayerirqrarseescvplkyl
qelhelhedwlihqrrpqsckvlvldadlnlenigteyqrsessifdais

    Sequence, based on observed residues (ATOM records): (download) 
    >1zmxF (F:)
tkyaegtqpftvliegnigsgkttylnhfekykndiclltepvekwrnvngvdllelmyk
dpkkwampfqsyvtltmlqshtaptnkklkimersifsarycfvenmrrngsleqgmynt
leewykfieesihvqadliiylrtspevayerirqrscvplkylqelhelhedwlihqck
vlvldad

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1zmxG (G:)
maeaascarkgtkyaegtqpftvliegnigsgkttylnhfekykndiclltepvekwrnv
ngvdllelmykdpkkwampfqsyvtltmlqshtaptnkklkimersifsarycfvenmrr
ngsleqgmyntleewykfieesihvqadliiylrtspevayerirqrarseescvplkyl
qelhelhedwlihqrrpqsckvlvldadlnlenigteyqrsessifdais

    Sequence, based on observed residues (ATOM records): (download) 
    >1zmxG (G:)
tkyaegtqpftvliegnigsgkttylnhfekykndiclltepvekwrnvngvdllelmyk
dpkkwampfqsyvtltmlqshtaptnkklkimersifsarycfvenmrrngsleqgmynt
leewykfieesihvqadliiylrtspevayerirqrvplkylqelhelhedwlihqrrpq
sckvlvlda

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1zmxH (H:)
maeaascarkgtkyaegtqpftvliegnigsgkttylnhfekykndiclltepvekwrnv
ngvdllelmykdpkkwampfqsyvtltmlqshtaptnkklkimersifsarycfvenmrr
ngsleqgmyntleewykfieesihvqadliiylrtspevayerirqrarseescvplkyl
qelhelhedwlihqrrpqsckvlvldadlnlenigteyqrsessifdais

    Sequence, based on observed residues (ATOM records): (download) 
    >1zmxH (H:)
tkyaegtqpftvliegnigsgkttylnhfekykndiclltepvekwrnvngvdllelmyk
dpkkwampfqsyvtltmlqshtaptnkklkimersifsarycfvenmrrngsleqgmynt
leewykfieesihvqadliiylrtspevayerirqrcvplkylqelhelhedwlihqckv
lvlda