PDB entry 1wog

View 1wog on RCSB PDB site
Description: Crystal Structure of Agmatinase Reveals Structural Conservation and Inhibition Mechanism of the Ureohydrolase Superfamily
Class: hydrolase
Keywords: alpha/beta fold, HYDROLASE
Deposited on 2004-08-18, released 2004-09-07
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.223
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: agmatinase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RZ04 (Start-303)
      • cloning artifact (304)
    Domains in SCOPe 2.07: d1woga1, d1woga2
  • Chain 'B':
    Compound: agmatinase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RZ04 (Start-303)
      • cloning artifact (304)
    Domains in SCOPe 2.07: d1wogb1, d1wogb2
  • Chain 'C':
    Compound: agmatinase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RZ04 (Start-303)
      • cloning artifact (304)
    Domains in SCOPe 2.07: d1wogc1, d1wogc2
  • Chain 'D':
    Compound: agmatinase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RZ04 (Start-303)
      • cloning artifact (304)
    Domains in SCOPe 2.07: d1wogd1, d1wogd2
  • Chain 'E':
    Compound: agmatinase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RZ04 (Start-303)
      • cloning artifact (304)
    Domains in SCOPe 2.07: d1woge1, d1woge2
  • Chain 'F':
    Compound: agmatinase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RZ04 (Start-303)
      • cloning artifact (304)
    Domains in SCOPe 2.07: d1wogf1, d1wogf2
  • Heterogens: MN, 16D, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1wogA (A:)
msgpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreasl
rsvppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggd
hsvsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvg
lrglrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipg
tsspepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcev
fdhvl

    Sequence, based on observed residues (ATOM records): (download) 
    >1wogA (A:)
gpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreaslrs
vppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggdhs
vsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvglr
glrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipgts
spepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcevfd
hvl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1wogB (B:)
msgpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreasl
rsvppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggd
hsvsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvg
lrglrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipg
tsspepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcev
fdhvl

    Sequence, based on observed residues (ATOM records): (download) 
    >1wogB (B:)
gpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreaslrs
vppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggdhs
vsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvglr
glrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipgts
spepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcevfd
hvl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1wogC (C:)
msgpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreasl
rsvppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggd
hsvsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvg
lrglrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipg
tsspepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcev
fdhvl

    Sequence, based on observed residues (ATOM records): (download) 
    >1wogC (C:)
gpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreaslrs
vppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggdhs
vsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvglr
glrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipgts
spepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcevfd
hvl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1wogD (D:)
msgpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreasl
rsvppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggd
hsvsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvg
lrglrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipg
tsspepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcev
fdhvl

    Sequence, based on observed residues (ATOM records): (download) 
    >1wogD (D:)
gpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreaslrs
vppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggdhs
vsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvglr
glrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipgts
spepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcevfd
hvl

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1wogE (E:)
msgpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreasl
rsvppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggd
hsvsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvg
lrglrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipg
tsspepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcev
fdhvl

    Sequence, based on observed residues (ATOM records): (download) 
    >1wogE (E:)
gpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreaslrs
vppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggdhs
vsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvglr
glrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipgts
spepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcevfd
hvl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1wogF (F:)
msgpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreasl
rsvppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggd
hsvsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvg
lrglrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipg
tsspepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcev
fdhvl

    Sequence, based on observed residues (ATOM records): (download) 
    >1wogF (F:)
gpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreaslrs
vppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggdhs
vsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvglr
glrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipgts
spepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcevfd
hvl