PDB entry 1w5c

View 1w5c on RCSB PDB site
Description: photosystem II from thermosynechococcus elongatus
Class: photosynthesis
Keywords: photosynthesis, water oxidation, photosystem, membrane protein
Deposited on 2004-08-06, released 2004-12-21
The last revision prior to the SCOP 1.75 freeze date was dated 2005-01-06, with a file datestamp of 2007-07-20.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Photosystem Q(B) protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1w5ca_
  • Chain 'B':
    Compound: Photosystem II core light harvesting protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1w5cb_
  • Chain 'C':
    Compound: Photosystem II CP43 protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1w5cc_
  • Chain 'D':
    Compound: Photosystem II reaction center D2 protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1w5cd_
  • Chain 'E':
    Compound: cytochrome b559 alpha subunit
    Species: THERMOSYNECHOCOCCUS ELONGATUS
    Database cross-references and differences (RAF-indexed):
    • PDB 1W5C
    • Uniprot P12238 (Start-83)
    Domains in SCOP 1.75: d1w5ce_
  • Chain 'F':
    Compound: cytochrome b559 beta subunit
    Species: THERMOSYNECHOCOCCUS ELONGATUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1w5cf_
  • Chain 'G':
    Compound: Photosystem Q(B) protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1w5cg_
  • Chain 'H':
    Compound: Photosystem II core light harvesting protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1w5ch_
  • Chain 'I':
    Compound: Photosystem II CP43 protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1w5ci_
  • Chain 'J':
    Compound: Photosystem II reaction center D2 protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1w5cj_
  • Chain 'K':
    Compound: cytochrome b559 alpha subunit
    Species: THERMOSYNECHOCOCCUS ELONGATUS
    Database cross-references and differences (RAF-indexed):
    • PDB 1W5C
    • Uniprot P12238 (Start-83)
    Domains in SCOP 1.75: d1w5ck_
  • Chain 'L':
    Compound: cytochrome b559 beta subunit
    Species: THERMOSYNECHOCOCCUS ELONGATUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1w5cl_
  • Chain 'O':
    Compound: Photosystem II manganese-stabilizing polypeptide
    Species: THERMOSYNECHOCOCCUS ELONGATUS
  • Chain 'P':
    Compound: Photosystem II manganese-stabilizing polypeptide
    Species: THERMOSYNECHOCOCCUS ELONGATUS
  • Chain 'S':
    Compound: Photosystem II 12 kDa extrinsic protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS
  • Chain 'T':
    Compound: cytochrome c-550
    Species: THERMOSYNECHOCOCCUS ELONGATUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1w5ct_
  • Chain 'U':
    Compound: Photosystem II 12 kDa extrinsic protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS
  • Chain 'V':
    Compound: cytochrome c-550
    Species: THERMOSYNECHOCOCCUS ELONGATUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1w5cv_
  • Chain 'X':
    Compound: unassigned subunits
    Species: THERMOSYNECHOCOCCUS ELONGATUS
  • Chain 'Y':
    Compound: unassigned subunits
    Species: THERMOSYNECHOCOCCUS ELONGATUS
  • Heterogens: FE2, MN, CL1, CLA, PHO, HEM, HEC, PL9, BCR

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1w5cA (A:)
mtttlqrresanlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdi
dgirepvsgsllygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfl
lgascymgrqwelsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtf
nfmivfqaehnilmhpfhqlgvagvfggalfcamhgslvtsslirettetesanygykfg
qeeetynivaahgyfgrlifqyasfnnsrslhfflaawpvvgvwftalgistmafnlngf
nfnhsvidakgnvintwadiinranlgmevmhernahnfpldlasaesapvamiapsing

    Sequence, based on observed residues (ATOM records): (download) 
    >1w5cA (A:)
resanlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdidgirepv
sgsllygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfllgascym
grqwelsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtfnfmivfq
aehnilmhpfhqlgvagvfggalfcamhgslvtsslirettetesygykfgqeeetyniv
aahgyfgrlifqyasfnnsrslhfflaawpvvgvwftalgistmafnlngfnfnhsvida
kgnvintwadiinranlgmevmhernahnfpl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1w5cB (B:)
mglpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgm
fvlpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdl
elfrdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqp
vapewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlss
siaavffaafvvagtmwygsattpielfgptryqwdssyfqqeinrrvqaslasgatlee
awsaipeklafydyignnpakgglfrtgpmnkgdgiaqawkghavfrnkegeelfvrrmp
affesfpviltdkngvvkadipfrraeskysfeqqgvtvsfyggelngqtftdpptvksy
arkaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhgartlfrdvfs
gidpelspeqvewgfyqkvgdvttrrkeav

    Sequence, based on observed residues (ATOM records): (download) 
    >1w5cB (B:)
glpwrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgmfv
lpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdlel
frdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqpva
pewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlsssi
aavffaafvvagtmwygsattpielfgptryqwdssyfqqeinrrvqaslasgatleeaw
saipeklafydyignnpakgglfrtgpmnkgdgiaqawkghavfrnkegeelfvrrmpaf
fesfpviltdkngvvkadipfrraeskysfeqqgvtvsfyggelngqtftdpptvksyar
kaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhgartlfrdvfsg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1w5cC (C:)
mktlssqkryspvvtlssnsifatnrdqessgfawwagnarlinlsgkllgahvahagli
vfwagamtlfelahfipekpmyeqgliliphiatlgwgvgpggevvdtfpffvvgvvhli
ssavlgfggvyhairgpetleeyssffgydwkdknkmttilgfhlivlgigalllvakam
ffgglydtwapgggdvrvitnptldprvifgyllkspfggegwivsvnnledvvgghiwi
gliciaggiwhilttpfgwarrafiwsgeaylsyslgalsmmgfiatcfvwfnntvypse
fygptgpeasqaqamtflirdqklganvgsaqgptglgkylmrsptgeiifggetmrfwd
frgpwleplrgpngldlnkikndiqpwqerraaeymthaplgslnsvggvateinsvnfv
sprswlatshfvlaffflvghlwhagraraaaagfekgidresepvlsmpsld

    Sequence, based on observed residues (ATOM records): (download) 
    >1w5cC (C:)
ifatnrdqessgfawwagnarlinlsgkllgahvahaglivfwagamtlfelahfipekp
myeqgliliphiatlgwgvgpggevvdtfpffvvgvvhlissavlgfggvyhairgpetl
eeyssffgydwkdknkmttilgfhlivlgigalllvakamffgglydtwapgggdvrvit
nptldprvifgyllkspfggegwivsvnnledvvgghiwigliciaggiwhilttpfgwa
rrafiwsgeaylsyslgalsmmgfiatcfvwfnntvypsefygptgpeasqaqamtflir
dqklganvgsaqgptglgkylmrsptgeiifggetmrfwdfrgpwleplrgpngldlnki
kndiqpwqerraaeymthaplgslnsvggvateinsvnfvsprswlatshfvlaffflvg
hlwhagraraaaagfekg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1w5cD (D:)
mtiaigrapaergwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswyt
hglassylegcnfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgaf
gligfmlrqfeiarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifr
fllffqgfhnwtlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqa
eetysmvtanrfwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfis
qeiraaedpefetfytknlllnegirawmapqdqphenfvfpeevlprgnal

    Sequence, based on observed residues (ATOM records): (download) 
    >1w5cD (D:)
mtiaigrapaergwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswyt
hglassylegcnfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgaf
gligfmlrqfeiarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifr
fllffqgfhnwtlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqa
eetysmvtanrfwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfis
qeiraaedpefetfytknlllnegirawmapqdqphenfvfpeevlprgn

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1w5cE (E:)
magttgerpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeq
rsiplvtdrfeakqqvetfleqlk

    Sequence, based on observed residues (ATOM records): (download) 
    >1w5cE (E:)
rpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeqrsiplvt
drfakqqvetfleqlk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1w5cF (F:)
tsntpnqepvsypiftvrwvavhtlavptifflgaiaamqfiqr

    Sequence, based on observed residues (ATOM records): (download) 
    >1w5cF (F:)
epvsypiftvrwvavhtlavptifflgaiaamqfiqr

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1w5cG (G:)
mtttlqrresanlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdi
dgirepvsgsllygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfl
lgascymgrqwelsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtf
nfmivfqaehnilmhpfhqlgvagvfggalfcamhgslvtsslirettetesanygykfg
qeeetynivaahgyfgrlifqyasfnnsrslhfflaawpvvgvwftalgistmafnlngf
nfnhsvidakgnvintwadiinranlgmevmhernahnfpldlasaesapvamiapsing

    Sequence, based on observed residues (ATOM records): (download) 
    >1w5cG (G:)
resanlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdidgirepv
sgsllygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfllgascym
grqwelsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtfnfmivfq
aehnilmhpfhqlgvagvfggalfcamhgslvtsslirettetesygykfgqeeetyniv
aahgyfgrlifqyasfnnsrslhfflaawpvvgvwftalgistmafnlngfnfnhsvida
kgnvintwadiinranlgmevmhernahnfpl

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1w5cH (H:)
mglpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgm
fvlpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdl
elfrdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqp
vapewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlss
siaavffaafvvagtmwygsattpielfgptryqwdssyfqqeinrrvqaslasgatlee
awsaipeklafydyignnpakgglfrtgpmnkgdgiaqawkghavfrnkegeelfvrrmp
affesfpviltdkngvvkadipfrraeskysfeqqgvtvsfyggelngqtftdpptvksy
arkaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhgartlfrdvfs
gidpelspeqvewgfyqkvgdvttrrkeav

    Sequence, based on observed residues (ATOM records): (download) 
    >1w5cH (H:)
lpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgmfv
lpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdlel
frdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqpva
pewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlsssi
aavffaafvvagtmwygsattpielfgptryqwdssyfqqeinrrvqaslasgatleeaw
saipeklafydyignnpakgglfrtgpmnkgdgiaqawkghavfrnkegeelfvrrmpaf
fesfpviltdkngvvkadipfrraeskysfeqqgvtvsfyggelngqtftdpptvksyar
kaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhgartlfrdvfsg

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1w5cI (I:)
mktlssqkryspvvtlssnsifatnrdqessgfawwagnarlinlsgkllgahvahagli
vfwagamtlfelahfipekpmyeqgliliphiatlgwgvgpggevvdtfpffvvgvvhli
ssavlgfggvyhairgpetleeyssffgydwkdknkmttilgfhlivlgigalllvakam
ffgglydtwapgggdvrvitnptldprvifgyllkspfggegwivsvnnledvvgghiwi
gliciaggiwhilttpfgwarrafiwsgeaylsyslgalsmmgfiatcfvwfnntvypse
fygptgpeasqaqamtflirdqklganvgsaqgptglgkylmrsptgeiifggetmrfwd
frgpwleplrgpngldlnkikndiqpwqerraaeymthaplgslnsvggvateinsvnfv
sprswlatshfvlaffflvghlwhagraraaaagfekgidresepvlsmpsld

    Sequence, based on observed residues (ATOM records): (download) 
    >1w5cI (I:)
ifatnrdqessgfawwagnarlinlsgkllgahvahaglivfwagamtlfelahfipekp
myeqgliliphiatlgwgvgpggevvdtfpffvvgvvhlissavlgfggvyhairgpetl
eeyssffgydwkdknkmttilgfhlivlgigalllvakamffgglydtwapgggdvrvit
nptldprvifgyllkspfggegwivsvnnledvvgghiwigliciaggiwhilttpfgwa
rrafiwsgeaylsyslgalsmmgfiatcfvwfnntvypsefygptgpeasqaqamtflir
dqklganvgsaqgptglgkylmrsptgeiifggetmrfwdfrgpwleplrgpngldlnki
kndiqpwqerraaeymthaplgslnsvggvateinsvnfvsprswlatshfvlaffflvg
hlwhagraraaaagfekg

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1w5cJ (J:)
mtiaigrapaergwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswyt
hglassylegcnfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgaf
gligfmlrqfeiarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifr
fllffqgfhnwtlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqa
eetysmvtanrfwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfis
qeiraaedpefetfytknlllnegirawmapqdqphenfvfpeevlprgnal

    Sequence, based on observed residues (ATOM records): (download) 
    >1w5cJ (J:)
mtiaigrapaergwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswyt
hglassylegcnfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgaf
gligfmlrqfeiarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifr
fllffqgfhnwtlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqa
eetysmvtanrfwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfis
qeiraaedpefetfytknlllnegirawmapqdqphenfvfpeevlprgn

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >1w5cK (K:)
magttgerpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeq
rsiplvtdrfeakqqvetfleqlk

    Sequence, based on observed residues (ATOM records): (download) 
    >1w5cK (K:)
rpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeqrsiplvt
drfakqqvetfleqlk

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >1w5cL (L:)
tsntpnqepvsypiftvrwvavhtlavptifflgaiaamqfiqr

    Sequence, based on observed residues (ATOM records): (download) 
    >1w5cL (L:)
epvsypiftvrwvavhtlavptifflgaiaamqfiqr

  • Chain 'O':
    No sequence available.

  • Chain 'P':
    No sequence available.

  • Chain 'S':
    No sequence available.

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >1w5cT (T:)
mlkkcvwlavalclclwqftmgtalaaeltpevltvplnsegktitltekqylegkrlfq
yacaschvggitktnpsldlrtetlalatpprdnieglvdymknpttydgeqeiaevhps
lrsadifpkmrnltekdlvaiaghilvepkilgdkwgggkvyy

    Sequence, based on observed residues (ATOM records): (download) 
    >1w5cT (T:)
eltpevltvplnsegktitltekqylegkrlfqyacaschvggitktnpsldlrtetlal
atpprdnieglvdymknpttydgeqeiaevhpslrsadifpkmrnltekdlvaiaghilv
epkilgdkwgggkvyy

  • Chain 'U':
    No sequence available.

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >1w5cV (V:)
mlkkcvwlavalclclwqftmgtalaaeltpevltvplnsegktitltekqylegkrlfq
yacaschvggitktnpsldlrtetlalatpprdnieglvdymknpttydgeqeiaevhps
lrsadifpkmrnltekdlvaiaghilvepkilgdkwgggkvyy

    Sequence, based on observed residues (ATOM records): (download) 
    >1w5cV (V:)
eltpevltvplnsegktitltekqylegkrlfqyacaschvggitktnpsldlrtetlal
atpprdnieglvdymknpttydgeqeiaevhpslrsadifpkmrnltekdlvaiaghilv
epkilgdkwgggkvyy

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    No sequence available.