PDB entry 1vi2

View 1vi2 on RCSB PDB site
Description: Crystal structure of shikimate-5-dehydrogenase with NAD
Class: Oxidoreductase
Keywords: structural genomics, Oxidoreductase
Deposited on 2003-12-01, released 2003-12-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.234
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Shikimate 5-dehydrogenase 2
    Species: Escherichia coli [TaxId:562]
    Gene: YDIB, B1692, C2087
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6D5 (Start-289)
      • modified residue (14)
      • modified residue (26)
      • modified residue (41)
      • modified residue (62)
      • modified residue (69)
      • modified residue (128)
      • modified residue (209)
      • modified residue (239)
      • modified residue (259)
      • modified residue (285)
    Domains in SCOPe 2.08: d1vi2a1, d1vi2a2
  • Chain 'B':
    Compound: Shikimate 5-dehydrogenase 2
    Species: Escherichia coli [TaxId:562]
    Gene: YDIB, B1692, C2087
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6D5
      • modified residue (14)
      • modified residue (26)
      • modified residue (41)
      • modified residue (62)
      • modified residue (69)
      • modified residue (128)
      • modified residue (209)
      • modified residue (239)
      • modified residue (259)
      • modified residue (285)
    Domains in SCOPe 2.08: d1vi2b1, d1vi2b2
  • Heterogens: SO4, NAD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vi2A (A:)
msldvtakyeliglmaypirhslspemqnkalekaglpftymafevdndsfpgaieglka
lkmrgtgvsmpnkqlaceyvdeltpaaklvgaintivnddgylrgyntdgtghiraikes
gfdikgktmvllgaggastaigaqgaieglkeiklfnrrdeffdkalafaqrvnentdcv
vtvtdladqqafaealasadiltngtkvgmkpleneslvndisllhpgllvtecvynphm
tkllqqaqqagcktidgygmllwqgaeqftlwtgkdfpleyvkqvmgfgaeggshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vi2A (A:)
akyeliglmaypirhslspemqnkalekaglpftymafevdndsfpgaieglkalkmrgt
gvsmpnkqlaceyvdeltpaaklvgaintivnddgylrgyntdgtghiraikesgfdikg
ktmvllgaggastaigaqgaieglkeiklfnrrdeffdkalafaqrvnentdcvvtvtdl
adqqafaealasadiltngtkvgmkpleneslvndisllhpgllvtecvynphmtkllqq
aqqagcktidgygmllwqgaeqftlwtgkdfpleyvkqvmgfga

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1vi2B (B:)
msldvtakyeliglmaypirhslspemqnkalekaglpftymafevdndsfpgaieglka
lkmrgtgvsmpnkqlaceyvdeltpaaklvgaintivnddgylrgyntdgtghiraikes
gfdikgktmvllgaggastaigaqgaieglkeiklfnrrdeffdkalafaqrvnentdcv
vtvtdladqqafaealasadiltngtkvgmkpleneslvndisllhpgllvtecvynphm
tkllqqaqqagcktidgygmllwqgaeqftlwtgkdfpleyvkqvmgfgaeggshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vi2B (B:)
kyeliglmaypirhslspemqnkalekaglpftymafevdndsfpgaieglkalkmrgtg
vsmpnkqlaceyvdeltpaaklvgaintivnddgylrgyntdgtghiraikesgfdikgk
tmvllgaggastaigaqgaieglkeiklfnrrdeffdkalafaqrvnentdcvvtvtdla
dqqafaealasadiltngtkvgmkpleneslvndisllhpgllvtecvynphmtkllqqa
qqagcktidgygmllwqgaeqftlwtgkdfpleyvkqvmgfg