PDB entry 1rf0

View 1rf0 on RCSB PDB site
Description: Crystal Structure of Fragment D of gammaE132A Fibrinogen
Class: blood clotting
Keywords: BLOOD COAGULATION, FIBRINOGEN, FIBRINOGEN FRAGMENT D, RECOMBINANT FIBRINOGEN FRAGMENT D, RECOMBINANT FIBRINOGEN gammaE132A, fragment D of gammaE132A fibrinogen, BLOOD CLOTTING
Deposited on 2003-11-07, released 2004-03-16
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.81 Å
R-factor: 0.233
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fibrinogen alpha/alpha-E Chain
    Species: Homo sapiens [TaxId:9606]
    Gene: FGA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1rf0a_
  • Chain 'B':
    Compound: fibrinogen beta chain
    Species: Homo sapiens [TaxId:9606]
    Gene: FGB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1rf0b1, d1rf0b2
  • Chain 'C':
    Compound: Fibrinogen gamma chain
    Species: Homo sapiens [TaxId:9606]
    Gene: FGG
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02679 (0-End)
      • engineered (36)
    Domains in SCOPe 2.07: d1rf0c1, d1rf0c2
  • Chain 'D':
    Compound: Fibrinogen alpha/alpha-E Chain
    Species: Homo sapiens [TaxId:9606]
    Gene: FGA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1rf0d_
  • Chain 'E':
    Compound: fibrinogen beta chain
    Species: Homo sapiens [TaxId:9606]
    Gene: FGB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1rf0e1, d1rf0e2
  • Chain 'F':
    Compound: Fibrinogen gamma chain
    Species: Homo sapiens [TaxId:9606]
    Gene: FGG
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02679 (0-End)
      • engineered (36)
    Domains in SCOPe 2.07: d1rf0f1, d1rf0f2
  • Heterogens: NAG, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1rf0A (A:)
viekvqhiqllqknvraqlvdmkrlevdidikirscrgscsralarevdlkdyedqqkql
eqviak

    Sequence, based on observed residues (ATOM records): (download) 
    >1rf0A (A:)
iekvqhiqllqknvraqlvdmkrlevdidikirscrgscsralarevdlkdyedqqkqle
qvia

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1rf0B (B:)
hqlyidetvnsniptnlrvlrsilenlrskiqklesdvsaqmeycrtpctvscnipvvsg
keceeiirkggetsemyliqpdssvkpyrvycdmntenggwtviqnrqdgsvdfgrkwdp
ykqgfgnvatntdgknycglpgeywlgndkisqltrmgptelliemedwkgdkvkahygg
ftvqneankyqisvnkyrgtagnalmdgasqlmgenrtmtihngmffstydrdndgwlts
dprkqcskedgggwwynrchaanpngryywggqytwdmakhgtddgvvwmnwkgswysmr
kmsmkirpffpqq

    Sequence, based on observed residues (ATOM records): (download) 
    >1rf0B (B:)
detvnsniptnlrvlrsilenlrskiqklesdvsaqmeycrtpctvscnipvvsgkecee
iirkggetsemyliqpdssvkpyrvycdmntenggwtviqnrqdgsvdfgrkwdpykqgf
gnvatntdgknycglpgeywlgndkisqltrmgptelliemedwkgdkvkahyggftvqn
eankyqisvnkyrgtagnalmdgasqlmgenrtmtihngmffstydrdndgwltsdprkq
cskedgggwwynrchaanpngryywggqytwdmakhgtddgvvwmnwkgswysmrkmsmk
irpffp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1rf0C (C:)
yeasilthdssirylqeiynsnnqkivnlkekvaqlaaqcqepckdtvqihditgkdcqd
iankgakqsglyfikplkanqqflvyceidgsgngwtvfqkrldgsvdfkknwiqykegf
ghlsptgttefwlgnekihlistqsaipyalrveledwngrtstadyamfkvgpeadkyr
ltyayfaggdagdafdgfdfgddpsdkfftshngmqfstwdndndkfegncaeqdgsgww
mnkchaghlngvyyqggtyskastpngydngiiwatwktrwysmkkttmkiipfnrltig
egqqhhlggak

    Sequence, based on observed residues (ATOM records): (download) 
    >1rf0C (C:)
yeasilthdssirylqeiynsnnqkivnlkekvaqlaaqcqepckdtvqihditgkdcqd
iankgakqsglyfikplkanqqflvyceidgsgngwtvfqkrldgsvdfkknwiqykegf
ghlsptgttefwlgnekihlistqsaipyalrveledwngrtstadyamfkvgpeadkyr
ltyayfaggdagdafdgfdfgddpsdkfftshngmqfstwdndndkfegncaeqdgsgww
mnkchaghlngvyyqggtyskastpngydngiiwatwktrwysmkkttmkiipfnrlt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1rf0D (D:)
viekvqhiqllqknvraqlvdmkrlevdidikirscrgscsralarevdlkdyedqqkql
eqviak

    Sequence, based on observed residues (ATOM records): (download) 
    >1rf0D (D:)
iqllqknvraqlvdmkrlevdidikirscrgscsralarevdlkdyedqqkqleqv

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1rf0E (E:)
hqlyidetvnsniptnlrvlrsilenlrskiqklesdvsaqmeycrtpctvscnipvvsg
keceeiirkggetsemyliqpdssvkpyrvycdmntenggwtviqnrqdgsvdfgrkwdp
ykqgfgnvatntdgknycglpgeywlgndkisqltrmgptelliemedwkgdkvkahygg
ftvqneankyqisvnkyrgtagnalmdgasqlmgenrtmtihngmffstydrdndgwlts
dprkqcskedgggwwynrchaanpngryywggqytwdmakhgtddgvvwmnwkgswysmr
kmsmkirpffpqq

    Sequence, based on observed residues (ATOM records): (download) 
    >1rf0E (E:)
niptnlrvlrsilenlrskiqklesdvsaqmeycrtpctvscnipvvsgkeceeiirkgg
etsemyliqpdssvkpyrvycdmntenggwtviqnrqdgsvdfgrkwdpykqgfgnvatn
tdgknycglpgeywlgndkisqltrmgptelliemedwkgdkvkahyggftvqneankyq
isvnkyrgtagnalmdgasqlmgenrtmtihngmffstydrdndgwltsdprkqcskedg
ggwwynrchaanpngryywggqytwdmakhgtddgvvwmnwkgswysmrkmsmkirpffp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1rf0F (F:)
yeasilthdssirylqeiynsnnqkivnlkekvaqlaaqcqepckdtvqihditgkdcqd
iankgakqsglyfikplkanqqflvyceidgsgngwtvfqkrldgsvdfkknwiqykegf
ghlsptgttefwlgnekihlistqsaipyalrveledwngrtstadyamfkvgpeadkyr
ltyayfaggdagdafdgfdfgddpsdkfftshngmqfstwdndndkfegncaeqdgsgww
mnkchaghlngvyyqggtyskastpngydngiiwatwktrwysmkkttmkiipfnrltig
egqqhhlggak

    Sequence, based on observed residues (ATOM records): (download) 
    >1rf0F (F:)
yeasilthdssirylqeiynsnnqkivnlkekvaqlaaqcqepckdtvqihditgkdcqd
iankgakqsglyfikplkanqqflvyceidgsgngwtvfqkrldgsvdfkknwiqykegf
ghlsptgttefwlgnekihlistqsaipyalrveledwngrtstadyamfkvgpeadkyr
ltyayfaggdagdafdgfdfgddpsdkfftshngmqfstwdndndkfegncaeqdgsgww
mnkchaghlngvyyqggtyskastpngydngiiwatwktrwysmkkttmkiipfnrlti