PDB entry 1qjy

View 1qjy on RCSB PDB site
Description: human rhinovirus 16 coat protein in complex with antiviral compound vp65099
Class: virus
Keywords: virus, nucleotidyltransferase, rhinovirus coat protein, RNA-binding, transferase, lipoprotein, win compound, phosphoprotein, thiol protease, capsid protein, drug, virion, membrane, helicase, protease, nucleotide-binding, human rhinovirus 16, RNA replication, antiviral compound, covalent protein-RNA linkage, myristate, hydrolase, cytoplasm, ATP-binding, cytoplasmic vesicle, host-virus interaction, RNA-directed RNA polymerase
Deposited on 1999-07-06, released 1999-07-20
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.233
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: protein vp1
    Species: HUMAN RHINOVIRUS 16 [TaxId:31708]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1qjy1_
  • Chain '2':
    Compound: protein vp2
    Species: HUMAN RHINOVIRUS 16 [TaxId:31708]
    Domains in SCOPe 2.07: d1qjy.1
  • Chain '3':
    Compound: protein vp3
    Species: HUMAN RHINOVIRUS 16 [TaxId:31708]
    Domains in SCOPe 2.07: d1qjy3_
  • Chain '4':
    Compound: protein vp4
    Species: HUMAN RHINOVIRUS 16 [TaxId:31708]
    Domains in SCOPe 2.07: d1qjy.1
  • Heterogens: ZN, W03, MYR, HOH

PDB Chain Sequences:

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qjy1 (1:)
npveryvdevlnevlvvpninqshpttsnaapvldaaetghtnkiqpedtietryvqssq
tldemsvesflgrsgcihesvldivdnyndqsftkwninlqemaqirrkfemftyarfds
eitmvpsvaakdghighivmqymyvppgapipttrddyawqsgtnasvfwqhgqpfprfs
lpflsiasayymfydgydgdtyksrygtvvtndmgtlcsrivtseqlhkvkvvtriyhka
khtkawcprppravqyshthttnyklssevhndvairprtnlttv

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >1qjy2 (2:)
spsveacgysdriiqitrgdstitsqdvanavvgygvwphyltpqdataidkptqpdtss
nrfytldskmwnstskgwwwklpdalkdmgifgenmfyhflgrsgytvhvqcnaskfhqg
tllvvmipehqlatvnkgnvnagykythpgeagrevgtqvenekqpsddnwlnfdgtllg
nllifphqfinlrsnnsatlivpyvnavpmdsmvrhnnwslviipvcqlqsnnisnivpi
tvsispmcaefsgaraktvvq

    Sequence, based on observed residues (ATOM records): (download) 
    >1qjy2 (2:)
sdriiqitrgdstitsqdvanavvgygvwphyltpqdataidkptqpdtssnrfytldsk
mwnstskgwwwklpdalkdmgifgenmfyhflgrsgytvhvqcnaskfhqgtllvvmipe
hqlatvnkgnvnagykythpgeagrevgtqvenekqpsddnwlnfdgtllgnllifphqf
inlrsnnsatlivpyvnavpmdsmvrhnnwslviipvcqlqsnnisnivpitvsispmca
efsgaraktvvq

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qjy3 (3:)
glpvyvtpgsgqfmttddmqspcalpwyhptkeifipgevknliemcqvdtlipinstqs
nignvsmytvtlspqtklaeeifaikvdiashplattligeiasyfthwtgslrfsfmfc
gtanttlkvllaytppgigkprsrkeamlgthvvwdvglqstvslvvpwisasqyrfttp
dtyssagyitcwyqtnfvvppntpntaemlcfvsgckdfclrmardtdlhkqtgpitq

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >1qjy4 (4:)
gaqvsrqnvgthstqnmvsngsslnyfninyfkdaassgasrldfsqdpskftdpvkdvl
ekgiptlq

    Sequence, based on observed residues (ATOM records): (download) 
    >1qjy4 (4:)
gaqvsrqslnyfninyfkdaassgasrld