PDB entry 1pdn

View 1pdn on RCSB PDB site
Description: crystal structure of a paired domain-DNA complex at 2.5 angstroms resolution reveals structural basis for pax developmental mutations
Class: gene regulation/DNA
Keywords: protein-DNA complex, double helix, pax, prd, paired domain, DNA-binding protein, gene regulation/DNA complex
Deposited on 1995-05-16, released 1995-07-31
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-11.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.234
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA (5'-d(*ap*ap*cp*gp*tp*cp*ap*cp*gp*gp*tp*tp*gp*ap*c)-3')
  • Chain 'B':
    Compound: DNA (5'-d(*tp*tp*gp*tp*cp*ap*ap*cp*cp*gp*tp*gp*ap*cp*g)-3')
  • Chain 'C':
    Compound: protein (prd paired)
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: PRD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1pdnc1, d1pdnc2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1pdnC (C:)
gqgrvnqlggvfingrplpnnirlkivemaadgirpcvisrqlrvshgcvskilnryqet
gsirpgviggskpriatpeienrieeykrsspgmfsweirekliregvcdrstapsvsai
srlvrgrd

    Sequence, based on observed residues (ATOM records): (download) 
    >1pdnC (C:)
qgrvnqlggvfingrplpnnirlkivemaadgirpcvisrqlrvshgcvskilnryqetg
sirpgviggskpriatpeienrieeykrsspgmfsweirekliregvcdrstapsvsais
rlv