PDB entry 1ncq

View 1ncq on RCSB PDB site
Description: The structure of HRV14 when complexed with pleconaril, an antiviral compound
Class: Virus
Keywords: rhinovirus 14, HRV, pleconaril, Icosahedral virus
Deposited on 2002-12-05, released 2003-12-16
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.216
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: coat protein vp1
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1ncqa_
  • Chain 'B':
    Compound: coat protein vp2
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03303 (Start-261)
      • see remark 999 (169)
    Domains in SCOPe 2.07: d1ncq.1
  • Chain 'C':
    Compound: coat protein vp3
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1ncqc_
  • Chain 'D':
    Compound: coat protein vp4
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1ncq.1
  • Heterogens: W11, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ncqA (A:)
glgdeleevivektkqtvasissgpkhtqkvpiltanetgatmpvlpsdsietrttymhf
ngsetdvecflgraacvhvteiqnkdatgidnhreaklfndwkinlsslvqlrkklelft
yvrfdseytilatasqpdsanyssnlvvqamyvppgapnpkewddytwqsasnpsvffkv
gdtsrfsvpyvglasayncfydgyshddaetqygitvlnhmgsmafrivnehdehktlvk
irvyhrakhveawiprapralpytsigrtnypkntepvikkrkgdiksy

    Sequence, based on observed residues (ATOM records): (download) 
    >1ncqA (A:)
tvasissgpkhtqkvpiltanetgatmpvlpsdsietrttymhfngsetdvecflgraac
vhvteiqnkdatgidnhreaklfndwkinlsslvqlrkklelftyvrfdseytilatasq
pdsanyssnlvvqamyvppgapnpkewddytwqsasnpsvffkvgdtsrfsvpyvglasa
yncfydgyshddaetqygitvlnhmgsmafrivnehdehktlvkirvyhrakhveawipr
apralpytsigrtnypkntepvikkrkgdiksy

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ncqB (B:)
spnveacgysdrvqqitlgnstittqeaanavvcyaewpeylpdvdasdvnktskpdtsv
crfytldsktwttgskgwcwklpdalkdmgvfgqnmffhslgrsgytvhvqcnatkfhsg
cllvvvipehqlasheggnvsvkytfthpgergidlssanevggpvkdvlynmngtllgn
llifphqfinlrtnntativipyinsvpidsmtrhnnvslmvipiapltvptgatpslpi
tvtiapmctefsgirsksivpq

    Sequence, based on observed residues (ATOM records): (download) 
    >1ncqB (B:)
gysdrvqqitlgnstittqeaanavvcyaewpeylpdvdasdvnktskpdtsvcrfytld
sktwttgskgwcwklpdalkdmgvfgqnmffhslgrsgytvhvqcnatkfhsgcllvvvi
pehqlasheggnvsvkytfthpgergidlssanevggpvkdvlynmngtllgnllifphq
finlrtnntativipyinsvpidsmtrhnnvslmvipiapltvptgatpslpitvtiapm
ctefsgirsksivpq

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ncqC (C:)
glptttlpgsgqflttddrqspsalpnyeptprihipgkvhnlleiiqvdtlipmnntht
kdevnsyliplnanrqneqvfgtnlfigdgvfkttllgeivqyythwsgslrfslmytgp
alssaklilaytppgargpqdrreamlgthvvwdiglqstivmtipwtsgvqfrytdpdt
ytsagflscwyqtslilppettgqvyllsfisacpdfklrlmkdtqtisqtvalte

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1ncqD (D:)
gaqvstqksgshenqniltngsnqtftvinyykdaastssagqslsmdpskftepvkdlm
lkgapaln

    Sequence, based on observed residues (ATOM records): (download) 
    >1ncqD (D:)
inyykdaastssagqslsmdpskftepvkdlmlkgapaln