PDB entry 1ltj
View 1ltj on RCSB PDB site
Description: Crystal Structure of Recombinant Human Fibrinogen Fragment D with the Peptide Ligands Gly-Pro-Arg-Pro-Amide and Gly-His-Arg-Pro-Amide
Class: blood clotting
Keywords: blood coagulation, fibrinogen, fibrinogen fragment D, recombinant fibrinogen fragment D, recombinant fibrinogen, recombinant fibrinogen fragment D with two peptide ligands, BLOOD CLOTTING
Deposited on
2002-05-20, released
2002-11-06
The last revision prior to the SCOPe 2.07 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.212
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Fibrinogen alpha/alpha-E Chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1ltja_ - Chain 'B':
Compound: fibrinogen beta chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1ltjb1, d1ltjb2 - Chain 'C':
Compound: Fibrinogen gamma chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1ltjc1, d1ltjc2 - Chain 'D':
Compound: Fibrinogen alpha/alpha-E Chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1ltjd_ - Chain 'E':
Compound: fibrinogen beta chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1ltje1, d1ltje2 - Chain 'F':
Compound: Fibrinogen gamma chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1ltjf1, d1ltjf2 - Chain 'G':
Compound: gly-pro-arg-pro
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Gly-His-Arg-Pro
Database cross-references and differences (RAF-indexed):
- Chain 'I':
Compound: gly-pro-arg-pro
Database cross-references and differences (RAF-indexed):
- Chain 'J':
Compound: Gly-His-Arg-Pro
Database cross-references and differences (RAF-indexed):
- Heterogens: CA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1ltjA (A:)
viekvqhiqllqknvraqlvdmkrlevdidikirscrgscsralarevdlkdyedqqkql
eqviak
Sequence, based on observed residues (ATOM records): (download)
>1ltjA (A:)
viekvqhiqllqknvraqlvdmkrlevdidikirscrgscsralarevdlkdyedqqkql
eqvia
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1ltjB (B:)
hqlyidetvnsniptnlrvlrsilenlrskiqklesdvsaqmeycrtpctvscnipvvsg
keceeiirkggetsemyliqpdssvkpyrvycdmntenggwtviqnrqdgsvdfgrkwdp
ykqgfgnvatntdgknycglpgeywlgndkisqltrmgptelliemedwkgdkvkahygg
ftvqneankyqisvnkyrgtagnalmdgasqlmgenrtmtihngmffstydrdndgwlts
dprkqcskedgggwwynrchaanpngryywggqytwdmakhgtddgvvwmnwkgswysmr
kmsmkirpffpqq
Sequence, based on observed residues (ATOM records): (download)
>1ltjB (B:)
iptnlrvlrsilenlrskiqklesdvsaqmeycrtpctvscnipvvsgkeceeiirkgge
tsemyliqpdssvkpyrvycdmntenggwtviqnrqdgsvdfgrkwdpykqgfgnvatnt
dgknycglpgeywlgndkisqltrmgptelliemedwkgdkvkahyggftvqneankyqi
svnkyrgtagnalmdgasqlmgenrtmtihngmffstydrdndgwltsdprkqcskedgg
gwwynrchaanpngryywggqytwdmakhgtddgvvwmnwkgswysmrkmsmkirpff
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1ltjC (C:)
yeasilthdssirylqeiynsnnqkivnlkekvaqleaqcqepckdtvqihditgkdcqd
iankgakqsglyfikplkanqqflvyceidgsgngwtvfqkrldgsvdfkknwiqykegf
ghlsptgttefwlgnekihlistqsaipyalrveledwngrtstadyamfkvgpeadkyr
ltyayfaggdagdafdgfdfgddpsdkfftshngmqfstwdndndkfegncaeqdgsgww
mnkchaghlngvyyqggtyskastpngydngiiwatwktrwysmkkttmkiipfnrltig
egqqhhlggak
Sequence, based on observed residues (ATOM records): (download)
>1ltjC (C:)
yeasilthdssirylqeiynsnnqkivnlkekvaqleaqcqepckdtvqihditgkdcqd
iankgakqsglyfikplkanqqflvyceidgsgngwtvfqkrldgsvdfkknwiqykegf
ghlsptgttefwlgnekihlistqsaipyalrveledwngrtstadyamfkvgpeadkyr
ltyayfaggdagdafdgfdfgddpsdkfftshngmqfstwdndndkfegncaeqdgsgww
mnkchaghlngvyyqggtyskastpngydngiiwatwktrwysmkkttmkiipfnrlti
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1ltjD (D:)
viekvqhiqllqknvraqlvdmkrlevdidikirscrgscsralarevdlkdyedqqkql
eqviak
Sequence, based on observed residues (ATOM records): (download)
>1ltjD (D:)
iqllqknvraqlvdmkrlevdidikirscrgscsralarevdlkdyedqqkqleqvia
- Chain 'E':
Sequence, based on SEQRES records: (download)
>1ltjE (E:)
hqlyidetvnsniptnlrvlrsilenlrskiqklesdvsaqmeycrtpctvscnipvvsg
keceeiirkggetsemyliqpdssvkpyrvycdmntenggwtviqnrqdgsvdfgrkwdp
ykqgfgnvatntdgknycglpgeywlgndkisqltrmgptelliemedwkgdkvkahygg
ftvqneankyqisvnkyrgtagnalmdgasqlmgenrtmtihngmffstydrdndgwlts
dprkqcskedgggwwynrchaanpngryywggqytwdmakhgtddgvvwmnwkgswysmr
kmsmkirpffpqq
Sequence, based on observed residues (ATOM records): (download)
>1ltjE (E:)
lrvlrsilenlrskiqklesdvsaqmeycrtpctvscnipvvsgkeceeiirkggetsem
yliqpdssvkpyrvycdmntenggwtviqnrqdgsvdfgrkwdpykqgfgnvatntdgkn
ycglpgeywlgndkisqltrmgptelliemedwkgdkvkahyggftvqneankyqisvnk
yrgtagnalmdgasqlmgenrtmtihngmffstydrdndgwltsdprkqcskedgggwwy
nrchaanpngryywggqytwdmakhgtddgvvwmnwkgswysmrkmsmkirpff
- Chain 'F':
Sequence, based on SEQRES records: (download)
>1ltjF (F:)
yeasilthdssirylqeiynsnnqkivnlkekvaqleaqcqepckdtvqihditgkdcqd
iankgakqsglyfikplkanqqflvyceidgsgngwtvfqkrldgsvdfkknwiqykegf
ghlsptgttefwlgnekihlistqsaipyalrveledwngrtstadyamfkvgpeadkyr
ltyayfaggdagdafdgfdfgddpsdkfftshngmqfstwdndndkfegncaeqdgsgww
mnkchaghlngvyyqggtyskastpngydngiiwatwktrwysmkkttmkiipfnrltig
egqqhhlggak
Sequence, based on observed residues (ATOM records): (download)
>1ltjF (F:)
lqeiynsnnqkivnlkekvaqleaqcqepckdtvqihditgkdcqdiankgakqsglyfi
kplkanqqflvyceidgsgngwtvfqkrldgsvdfkknwiqykegfghlsptgttefwlg
nekihlistqsaipyalrveledwngrtstadyamfkvgpeadkyrltyayfaggdagda
fdgfdfgddpsdkfftshngmqfstwdndndkfegncaeqdgsgwwmnkchaghlngvyy
qggtyskastpngydngiiwatwktrwysmkkttmkiipfnrlti
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.