PDB entry 1li1

View 1li1 on RCSB PDB site
Description: The 1.9-A crystal structure of the noncollagenous (NC1) domain of human placenta collagen IV shows stabilization via a novel type of covalent Met-Lys cross-link
Class: structural protein
Keywords: basement membrane, collagen IV, NC1 domain, covalent cross-link, protein-protein interaction, STRUCTURAL PROTEIN
Deposited on 2002-04-17, released 2002-05-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.182
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Collagen alpha 1(IV)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1li1a1, d1li1a2
  • Chain 'B':
    Compound: Collagen alpha 1(IV)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1li1b1, d1li1b2
  • Chain 'C':
    Compound: Collagen alpha 2(IV)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1li1c1, d1li1c2
  • Chain 'D':
    Compound: Collagen alpha 1(IV)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1li1d1, d1li1d2
  • Chain 'E':
    Compound: Collagen alpha 1(IV)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1li1e1, d1li1e2
  • Chain 'F':
    Compound: Collagen alpha 2(IV)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1li1f1, d1li1f2
  • Heterogens: ACT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1li1A (A:)
svdhgflvtrhsqtiddpqcpsgtkilyhgysllyvqgnerahgqdlgtagsclrkfstm
pflfcninnvcnfasrndysywlstpepmpmsmapitgenirpfisrcavceapamvmav
hsqtiqippcpsgwsslwigysfvmhtsagaegsgqalaspgscleefrsapfiechgrg
tcnyyanaysfwlatiersemfkkptpstlkagelrthvsrcqvcmrrt

    Sequence, based on observed residues (ATOM records): (download) 
    >1li1A (A:)
vdhgflvtrhsqtiddpqcpsgtkilyhgysllyvqgnerahgqdlgtagsclrkfstmp
flfcninnvcnfasrndysywlstpepmpmsmapitgenirpfisrcavceapamvmavh
sqtiqippcpsgwsslwigysfvmhtsagaegsgqalaspgscleefrsapfiechgrgt
cnyyanaysfwlatiersemfkkptpstlkagelrthvsrcqvcmrrt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1li1B (B:)
svdhgflvtrhsqtiddpqcpsgtkilyhgysllyvqgnerahgqdlgtagsclrkfstm
pflfcninnvcnfasrndysywlstpepmpmsmapitgenirpfisrcavceapamvmav
hsqtiqippcpsgwsslwigysfvmhtsagaegsgqalaspgscleefrsapfiechgrg
tcnyyanaysfwlatiersemfkkptpstlkagelrthvsrcqvcmrrt

    Sequence, based on observed residues (ATOM records): (download) 
    >1li1B (B:)
dhgflvtrhsqtiddpqcpsgtkilyhgysllyvqgnerahgqdlgtagsclrkfstmpf
lfcninnvcnfasrndysywlstpepmpmsmapitgenirpfisrcavceapamvmavhs
qtiqippcpsgwsslwigysfvmhtsagaegsgqalaspgscleefrsapfiechgrgtc
nyyanaysfwlatiersemfkkptpstlkagelrthvsrcqvcmrrt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1li1C (C:)
svsigyllvkhsqtdqepmcpvgmnklwsgysllyfegqekahnqdlglagsclarfstm
pflycnpgdvcyyasrndksywlsttaplpmmpvaedeikpyisrcsvceapaiaiavhs
qdvsiphcpagwrslwigysflmhtaagdegggqslvspgscledfratpfiecnggrgt
chyyankysfwlttipeqsfqgspsadtlkaglirthisrcqvcmknl

    Sequence, based on observed residues (ATOM records): (download) 
    >1li1C (C:)
gyllvkhsqtdqepmcpvgmnklwsgysllyfegqekahnqdlglagsclarfstmpfly
cnpgdvcyyasrndksywlsttaplpmmpvaedeikpyisrcsvceapaiaiavhsqdvs
iphcpagwrslwigysflmhtaagdegggqslvspgscledfratpfiecnggrgtchyy
ankysfwlttipeqsfqgspsadtlkaglirthisrcqvcmknl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1li1D (D:)
svdhgflvtrhsqtiddpqcpsgtkilyhgysllyvqgnerahgqdlgtagsclrkfstm
pflfcninnvcnfasrndysywlstpepmpmsmapitgenirpfisrcavceapamvmav
hsqtiqippcpsgwsslwigysfvmhtsagaegsgqalaspgscleefrsapfiechgrg
tcnyyanaysfwlatiersemfkkptpstlkagelrthvsrcqvcmrrt

    Sequence, based on observed residues (ATOM records): (download) 
    >1li1D (D:)
vdhgflvtrhsqtiddpqcpsgtkilyhgysllyvqgnerahgqdlgtagsclrkfstmp
flfcninnvcnfasrndysywlstpepmpmsmapitgenirpfisrcavceapamvmavh
sqtiqippcpsgwsslwigysfvmhtsagaegsgqalaspgscleefrsapfiechgrgt
cnyyanaysfwlatiersemfkkptpstlkagelrthvsrcqvcmrrt

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1li1E (E:)
svdhgflvtrhsqtiddpqcpsgtkilyhgysllyvqgnerahgqdlgtagsclrkfstm
pflfcninnvcnfasrndysywlstpepmpmsmapitgenirpfisrcavceapamvmav
hsqtiqippcpsgwsslwigysfvmhtsagaegsgqalaspgscleefrsapfiechgrg
tcnyyanaysfwlatiersemfkkptpstlkagelrthvsrcqvcmrrt

    Sequence, based on observed residues (ATOM records): (download) 
    >1li1E (E:)
dhgflvtrhsqtiddpqcpsgtkilyhgysllyvqgnerahgqdlgtagsclrkfstmpf
lfcninnvcnfasrndysywlstpepmpmsmapitgenirpfisrcavceapamvmavhs
qtiqippcpsgwsslwigysfvmhtsagaegsgqalaspgscleefrsapfiechgrgtc
nyyanaysfwlatiersemfkkptpstlkagelrthvsrcqvcmrrt

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1li1F (F:)
svsigyllvkhsqtdqepmcpvgmnklwsgysllyfegqekahnqdlglagsclarfstm
pflycnpgdvcyyasrndksywlsttaplpmmpvaedeikpyisrcsvceapaiaiavhs
qdvsiphcpagwrslwigysflmhtaagdegggqslvspgscledfratpfiecnggrgt
chyyankysfwlttipeqsfqgspsadtlkaglirthisrcqvcmknl

    Sequence, based on observed residues (ATOM records): (download) 
    >1li1F (F:)
igyllvkhsqtdqepmcpvgmnklwsgysllyfegqekahnqdlglagsclarfstmpfl
ycnpgdvcyyasrndksywlsttaplpmmpvaedeikpyisrcsvceapaiaiavhsqdv
siphcpagwrslwigysflmhtaagdegggqslvspgscledfratpfiecnggrgtchy
yankysfwlttipeqsfqgspsadtlkaglirthisrcqvcmknl