PDB entry 1izl

View 1izl on RCSB PDB site
Description: Crystal Structure of Photosystem II
Class: photosynthesis
Keywords: Photosynthesis, Photosynthetic reaction center, Core-antenna, Thermophilic cyanobacterium, Membrane protein complex, Electron transfer, Energy transfer
Deposited on 2002-10-04, released 2003-01-14
The last revision prior to the SCOP 1.75 freeze date was dated 2003-01-14, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.7 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: photosystem II: subunit psbv
    Species: Thermosynechococcus vulcanus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1izl0_
  • Chain '1':
    Compound: Photosystem II: Subunit PsbX
    Species: Thermosynechococcus elongatus BP-1
    Domains in SCOP 1.75: d1izl1_
  • Chain 'A':
    Compound: photosystem II: subunit psba
    Species: Thermosynechococcus vulcanus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1izla_
  • Chain 'B':
    Compound: photosystem II: subunit psbb
    Species: Thermosynechococcus elongatus BP-1
    Domains in SCOP 1.75: d1izlb_
  • Chain 'C':
    Compound: photosystem II: subunit psbc
    Species: Thermosynechococcus elongatus BP-1
    Domains in SCOP 1.75: d1izlc_
  • Chain 'D':
    Compound: photosystem II: subunit psbd
    Species: Thermosynechococcus elongatus BP-1
    Database cross-references and differences (RAF-indexed):
    • GB NP_681245 (Start-351)
    Domains in SCOP 1.75: d1izld_
  • Chain 'E':
    Compound: photosystem II: subunit psbe
    Species: Thermosynechococcus elongatus BP-1
    Database cross-references and differences (RAF-indexed):
    • GB NP_682331
    Domains in SCOP 1.75: d1izle_
  • Chain 'F':
    Compound: photosystem II: subunit psbf
    Species: Thermosynechococcus elongatus BP-1
    Database cross-references and differences (RAF-indexed):
    • GB NP_682332
    Domains in SCOP 1.75: d1izlf_
  • Chain 'G':
    Compound: Photosystem II: Subunit PsbG
    Species: Thermosynechococcus elongatus BP-1
    Domains in SCOP 1.75: d1izlg_
  • Chain 'H':
    Compound: Photosystem II: Subunit PsbH
    Species: Thermosynechococcus elongatus BP-1
    Domains in SCOP 1.75: d1izlh_
  • Chain 'I':
    Compound: Photosystem II: Subunit PsbI
    Species: Thermosynechococcus elongatus BP-1
    Domains in SCOP 1.75: d1izli_
  • Chain 'J':
    Compound: photosystem II: subunit psba
    Species: Thermosynechococcus vulcanus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1izlj_
  • Chain 'K':
    Compound: Photosystem II: Subunit PsbK
    Species: Thermosynechococcus elongatus BP-1
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1izlk_
  • Chain 'L':
    Compound: photosystem II: subunit psbb
    Species: Thermosynechococcus elongatus BP-1
    Domains in SCOP 1.75: d1izll_
  • Chain 'M':
    Compound: photosystem II: subunit psbc
    Species: Thermosynechococcus elongatus BP-1
    Domains in SCOP 1.75: d1izlm_
  • Chain 'N':
    Compound: photosystem II: subunit psbd
    Species: Thermosynechococcus elongatus BP-1
    Database cross-references and differences (RAF-indexed):
    • GB NP_681245 (Start-351)
    Domains in SCOP 1.75: d1izln_
  • Chain 'O':
    Compound: photosystem II: subunit psbo
    Species: Thermosynechococcus elongatus BP-1
    Domains in SCOP 1.75: d1izlo_
  • Chain 'P':
    Compound: photosystem II: subunit psbe
    Species: Thermosynechococcus elongatus BP-1
    Database cross-references and differences (RAF-indexed):
    • GB NP_682331
    Domains in SCOP 1.75: d1izlp_
  • Chain 'Q':
    Compound: photosystem II: subunit psbf
    Species: Thermosynechococcus elongatus BP-1
    Database cross-references and differences (RAF-indexed):
    • GB NP_682332
    Domains in SCOP 1.75: d1izlq_
  • Chain 'R':
    Compound: Photosystem II: Subunit PsbG
    Species: Thermosynechococcus elongatus BP-1
    Domains in SCOP 1.75: d1izlr_
  • Chain 'S':
    Compound: Photosystem II: Subunit PsbH
    Species: Thermosynechococcus elongatus BP-1
    Domains in SCOP 1.75: d1izls_
  • Chain 'T':
    Compound: Photosystem II: Subunit PsbI
    Species: Thermosynechococcus elongatus BP-1
    Domains in SCOP 1.75: d1izlt_
  • Chain 'U':
    Compound: Photosystem II: Subunit PsbU
    Species: Thermosynechococcus elongatus BP-1
    Domains in SCOP 1.75: d1izlu_
  • Chain 'V':
    Compound: photosystem II: subunit psbv
    Species: Thermosynechococcus vulcanus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1izlv_
  • Chain 'W':
    Compound: Photosystem II: Subunit PsbK
    Species: Thermosynechococcus elongatus BP-1
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1izlw_
  • Chain 'X':
    Compound: Photosystem II: Subunit PsbX
    Species: Thermosynechococcus elongatus BP-1
    Domains in SCOP 1.75: d1izlx_
  • Chain 'Y':
    Compound: photosystem II: subunit psbo
    Species: Thermosynechococcus elongatus BP-1
    Domains in SCOP 1.75: d1izly_
  • Chain 'Z':
    Compound: Photosystem II: Subunit PsbU
    Species: Thermosynechococcus elongatus BP-1
    Domains in SCOP 1.75: d1izlz_
  • Heterogens: MN, FE, CLA, PHO, HEM, PLA, BCR

PDB Chain Sequences:

  • Chain '0':
    Sequence, based on SEQRES records: (download) 
    >1izl0 (0:)
aeltpevltvplnsegktitltekqylegkrlfqyacaschvggitktnpsldlrtetla
latpprdnieglvdymknpttydgeqeiaevhpslrsadifpkmrnltekdlvaiaghil
vepkilgdkwgggkvyy

    Sequence, based on observed residues (ATOM records): (download) 
    >1izl0 (0:)
eltpevltvpltekqylegkrlfqyacaschvggitktnpsldlrtetlalatpprdnie
glvdymknpttydgeqeiaevhpslrsadifpkmrnltekdlvaiaghilvepki

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1izl1 (1:)
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  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1izlA (A:)
mtttlqrresanlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdi
dgirepvsgsllygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfl
lgascymgrqwelsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtf
nfmivfqaehnilmhpfhqlgvagvfggalfcamhgslvtsslirettetesanygykfg
qeeetynivaahgyfgrlifqyasfnnsrslhfflaawrvvgvwfaalgistmafnlngf
nfnhsvidakgnvintwadiinranlgmevmhernahnfpldlasaesapvamiapsing

    Sequence, based on observed residues (ATOM records): (download) 
    >1izlA (A:)
wfgvimiptllaaticfviafiaappvdidgirepvsgsllygnniitgavvpssnhfyp
iweaasldewlynggpyqliifhfllgascymgrqwelsyrlgmrpwicvaysaplasaf
avfliypigqgsfsdgmplgisgtfnfmivfqaehnilmhpfhqlgvagvfggalfcamh
gslvtsslirettetesanygykfgahgyfgrlifqyasfnnsrslhfflaawrvvgvwf
aalgistmafnlngfnfnhsvidakgnvintwadiinranlgmevmhernahnfpldla

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1izlB (B:)
mglpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgm
fvlpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdl
elfrdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqp
vapewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlss
siaavffaafvvagtmwyxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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xxxxggelngqtftdpptvksyarkaifgeifefdtetlnsdgifrtsprgwftfahavf
allfffghiwhgartlfrdvfsgidpelspeqvewgfyqkvgdvttrrkeav

    Sequence, based on observed residues (ATOM records): (download) 
    >1izlB (B:)
mglpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgm
fvlpfmarlgvtgswsgtgidpgfwsfegvalahivlsgllflaacwhwvywdlelfrdp
rtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpqpvapewgpdgfnpy
npggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlsssiaavffaafvva
gtmwyxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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tdpptvksyarkaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhga
rtlfrdv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1izlC (C:)
mktlssqkryspvvtlssnsifatnrdqessgfawwagnarlinlsgkllgahvahagli
vfwagamtlfelahfipekpmyeqgliliphiatlgwgvgpggevvdtfpffvvgvvhli
ssavlgfggvyhairgpetleeyssffgydwkdknkmttilgfhlivlgigalllvakam
ffgglydtwapgggdvrvitnptldprvifgyllkspfggegwivsvnnledvvgghiwi
gliciaggiwhilttpfgwarrafiwsgeaylsyslgalsmmgfiatcfvwfnntvypxx
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xxxxxxxxxxxxxxxdlnkikndiqpwqerraaeymthaplgslnsvggvateinsvnfv
sprswlatshfvlaffflvghlwhagraraaaagfekgidresepvlsmpsld

    Sequence, based on observed residues (ATOM records): (download) 
    >1izlC (C:)
kllgahvahaglivfwagamtlfelahfipekpmyeqgliliphiatlgwgvgpggevvd
tfpffvvgvvhlissavlgfggvyhairgpetleeywkdknkmttilgfhlivlgigall
lvakamffgglydtwapgggdvrvikspfggegwivsvnnledvvgghiwigliciaggi
whiarrafiwsgeaylsyslgalsmmgfiatcfvwfnntvypxxxxxxxxxxxxxxxxxx
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ggvateinsvnfvsprswlatshfvlaffflvghlwhagraraaaagfe

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1izlD (D:)
mtiaigrapaergwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswyt
hglassylegcnfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgaf
gligfmlrqfeiarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifr
fllffqgfhnwtlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqa
eetysmvtanrfwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfis
qeiraaedpefetfytknlllnegirawmapqdqphenfvfpeevlprgnal

    Sequence, based on observed residues (ATOM records): (download) 
    >1izlD (D:)
gillfpcaylalggwltgttfvtswythglassylegcnfltvavsteaqgdftrwcqlg
glwtfialhgafgligfmlrqfeiarlvgvrpynaiafsapiavfvsvfliyplgfapsf
gvaaifrfllffqgfhnwtlnpfhmmgvagvlggallcaihgatventysmvtanrfwsq
ifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfisqeiraaedpefetfy
tknlllnegirawmapqdqphenfvfpeevlprgnal

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1izlE (E:)
agttgerpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeqr
siplvtdrfeakqqvetfleqlk

    Sequence, based on observed residues (ATOM records): (download) 
    >1izlE (E:)
rpfsdiitsvrywvihsitipalfiagwlfvstgl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1izlF (F:)
tsntpnqepvsypiftvrwvavhtlavptifflgaiaamqfiqr

    Sequence, based on observed residues (ATOM records): (download) 
    >1izlF (F:)
piftvrwvavhtlavptifflgaiaamqfi

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1izlG (G:)
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  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1izlH (H:)
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  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1izlI (I:)
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  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1izlJ (J:)
mtttlqrresanlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdi
dgirepvsgsllygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfl
lgascymgrqwelsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtf
nfmivfqaehnilmhpfhqlgvagvfggalfcamhgslvtsslirettetesanygykfg
qeeetynivaahgyfgrlifqyasfnnsrslhfflaawrvvgvwfaalgistmafnlngf
nfnhsvidakgnvintwadiinranlgmevmhernahnfpldlasaesapvamiapsing

    Sequence, based on observed residues (ATOM records): (download) 
    >1izlJ (J:)
wfgvimiptllaaticfviafiaappvdidgirepvsgsllygnniitgavvpssnhfyp
iweaasldewlynggpyqliifhfllgascymgrqwelsyrlgmrpwicvaysaplasaf
avfliypigqgsfsdgmplgisgtfnfmivfqaehnilmhpfhqlgvagvfggalfcamh
gslvtsslirettetesanygykfgahgyfgrlifqyasfnnsrslhfflaawrvvgvwf
aalgistmafnlngfnfnhsvidakgnvintwadiinranlgmevmhernahnfpldla

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >1izlK (K:)
klpeayaifdplvdvlpvipvlflalafvwqaavgfr

    Sequence, based on observed residues (ATOM records): (download) 
    >1izlK (K:)
ayaifdplvdvlpvipvlflalafvwq

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >1izlL (L:)
mglpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgm
fvlpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdl
elfrdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqp
vapewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlss
siaavffaafvvagtmwyxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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xxxxggelngqtftdpptvksyarkaifgeifefdtetlnsdgifrtsprgwftfahavf
allfffghiwhgartlfrdvfsgidpelspeqvewgfyqkvgdvttrrkeav

    Sequence, based on observed residues (ATOM records): (download) 
    >1izlL (L:)
mglpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgm
fvlpfmarlgvtgswsgetgidpgfwsfegvalahivlsgllflaacwhwvywdlelfrd
epaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpqpvapewgpdgfnpynpg
gvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlsssiaavffaafvvagtm
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xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxggelngqtftdp
ptvksyarkaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhgartl
frdv

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >1izlM (M:)
mktlssqkryspvvtlssnsifatnrdqessgfawwagnarlinlsgkllgahvahagli
vfwagamtlfelahfipekpmyeqgliliphiatlgwgvgpggevvdtfpffvvgvvhli
ssavlgfggvyhairgpetleeyssffgydwkdknkmttilgfhlivlgigalllvakam
ffgglydtwapgggdvrvitnptldprvifgyllkspfggegwivsvnnledvvgghiwi
gliciaggiwhilttpfgwarrafiwsgeaylsyslgalsmmgfiatcfvwfnntvypxx
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xxxxxxxxxxxxxxxdlnkikndiqpwqerraaeymthaplgslnsvggvateinsvnfv
sprswlatshfvlaffflvghlwhagraraaaagfekgidresepvlsmpsld

    Sequence, based on observed residues (ATOM records): (download) 
    >1izlM (M:)
inlsgkllgahvahaglivfwagamtlfelahfipekpmyeqgliliphiatlgwgvdtf
pffvvgvvhlissavlgfggvyhairgpetlwkdknkmttilgfhlivlgigalllvaka
mfflydtwapgggdvrvikspfggegwivsvnnledvvgghiwigliciaggiwhilttg
warrafiwsgeaylsyslgalsmmgfiatcfvwfnntvypxxxxxxxxxxxxxxxxxxxx
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vateinsvnfvsprswlatshfvlaffflvghlwhagraraaaagfe

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >1izlN (N:)
mtiaigrapaergwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswyt
hglassylegcnfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgaf
gligfmlrqfeiarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifr
fllffqgfhnwtlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqa
eetysmvtanrfwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfis
qeiraaedpefetfytknlllnegirawmapqdqphenfvfpeevlprgnal

    Sequence, based on observed residues (ATOM records): (download) 
    >1izlN (N:)
gillfpcaylalggwltgttfvtswythglassylegcnfltvavsteaqgdftrwcqlg
glwtfialhgafgligfmlrqfeiarlvgvrpynaiafsapiavfvsvfliyplgfapsf
gvaaifrfllffqgfhnwtlnpfhmmgvagvlggallcaihgatventysmvtanrfwsq
ifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfisqeiraaedpefetfy
tknlllnegirawmapqdqphenfvfpeevlprgnal

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1izlO (O:)
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  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >1izlP (P:)
agttgerpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeqr
siplvtdrfeakqqvetfleqlk

    Sequence, based on observed residues (ATOM records): (download) 
    >1izlP (P:)
tipalfiagwlfvstgl

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >1izlQ (Q:)
tsntpnqepvsypiftvrwvavhtlavptifflgaiaamqfiqr

    Sequence, based on observed residues (ATOM records): (download) 
    >1izlQ (Q:)
rwvavhtlavptifflgaiaamqfiq

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1izlR (R:)
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  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >1izlS (S:)
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    Sequence, based on observed residues (ATOM records): (download) 
    >1izlS (S:)
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  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >1izlT (T:)
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    Sequence, based on observed residues (ATOM records): (download) 
    >1izlT (T:)
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  • Chain 'U':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1izlU (U:)
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  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >1izlV (V:)
aeltpevltvplnsegktitltekqylegkrlfqyacaschvggitktnpsldlrtetla
latpprdnieglvdymknpttydgeqeiaevhpslrsadifpkmrnltekdlvaiaghil
vepkilgdkwgggkvyy

    Sequence, based on observed residues (ATOM records): (download) 
    >1izlV (V:)
eltpevltvplnsegktitltekqylegkrlfqyacaschvggitktnpsldlrtetlal
atpprdnieglvdymknpttydgeqeiaevhpslrsadifpkmrnltekdlvaiaghilv
epkilgdkw

  • Chain 'W':
    Sequence, based on SEQRES records: (download) 
    >1izlW (W:)
klpeayaifdplvdvlpvipvlflalafvwqaavgfr

    Sequence, based on observed residues (ATOM records): (download) 
    >1izlW (W:)
ayaifdplvdvlpvipvlflalafvwq

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1izlX (X:)
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  • Chain 'Y':
    Sequence, based on SEQRES records: (download) 
    >1izlY (Y:)
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    Sequence, based on observed residues (ATOM records): (download) 
    >1izlY (Y:)
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  • Chain 'Z':
    Sequence, based on SEQRES records: (download) 
    >1izlZ (Z:)
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    Sequence, based on observed residues (ATOM records): (download) 
    >1izlZ (Z:)
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