PDB entry 1d5m

View 1d5m on RCSB PDB site
Description: x-ray crystal structure of hla-dr4 complexed with peptide and seb
Class: immune system/peptide inhibitor
Keywords: MHC class II-superantigen complex, immune system-peptide inhibitor complex, peptidomimetic inhibitor
Deposited on 1999-10-07, released 2000-06-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hla class II histocompatibility antigen
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1d5ma1, d1d5ma2
  • Chain 'B':
    Compound: hla class II histocompatibility antigen
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P13760
      • conflict (179)
    Domains in SCOPe 2.08: d1d5mb1, d1d5mb2
  • Chain 'C':
    Compound: enterotoxin type b
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1d5mc1, d1d5mc2
  • Chain 'D':
    Compound: inhibitor
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 1D5M
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1d5mA (A:)
ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
d

    Sequence, based on observed residues (ATOM records): (download) 
    >1d5mA (A:)
ehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalani
avdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwlr
ngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1d5mB (B:)
gdtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaey
wnsqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypaktqplqhhnllvcsvn
gfypgsievrwfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
tspltvewrars

    Sequence, based on observed residues (ATOM records): (download) 
    >1d5mB (B:)
dtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaeyw
nsqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypanllvcsvngfypgsiev
rwfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpsvtspltvewr
a

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1d5mC (C:)
esqpdpkpdelhksskftglmenmkvlyddnhvsainvksidqflyfdliysikdtklgn
ydnvrvefknkdladkykdkyvdvfganyyyqcyfskktndinshqtdkrktcmyggvte
hngnqldkyrsitvrvfedgknllsfdvqtnkkkvtaqeldyltrhylvknkklyefnns
pyetgyikfienensfwydmmpapgdkfdqskylmmyndnkmvdskdvkievylttkkk

    Sequence, based on observed residues (ATOM records): (download) 
    >1d5mC (C:)
sqpdpkpdelhksskftglmenmkvlyddnhvsainvksidqflyfdliysikdtklgny
dnvrvefknkdladkykdkyvdvfganyyyqcyfskkkrktcmyggvtehngnqldkyrs
itvrvfedgknllsfdvqtnkkkvtaqeldyltrhylvknkklyefnnspyetgyikfie
nensfwydmmpapgdkfdqskylmmyndnkmvdskdvkievylttk

  • Chain 'D':
    No sequence available.