SCOPe 2.05: Domain d1rk8b_: 1rk8 B:

Lineage for d1rk8b_ (1rk8 B:)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.232: Mago nashi protein [89816] (1 superfamily)
   beta(4)-alpha-beta(2)-alpha; 2 layers: alpha/beta; antiparallel beta-sheet, order: 651234

4. Superfamily d.232.1: Mago nashi protein [89817] (1 family)
   automatically mapped to Pfam PF02792

5. Family d.232.1.1: Mago nashi protein [89818] (1 protein)

6. Protein Mago nashi protein [89819] (2 species)

7. Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [89820] (3 PDB entries)

8. Domain d1rk8b_: 1rk8 B: [97604]
   Other proteins in same PDB: d1rk8a_, d1rk8c_
   protein/RNA complex; complexed with ca

Details for d1rk8b_

PDB Entry: 1rk8, 1.9 Å

PDB Description: structure of the cytosolic protein pym bound to the mago-y14 core of the exon junction complex

PDB Compounds: (B:) mago nashi protein

SCOPe Domain Sequences for d1rk8b_:

Sequence, based on SEQRES records:

>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
edfylryyvghkgkfgheflefefrpdgklryannsnykndtmirkeafvhqsvmeelkr
iiidseimqeddlpwpppdrvgrqeleivigdehisfttsktgslvdvnrskdpeglrcf
yylvqdlkclvfsliglhfki

Sequence, based on observed residues (ATOM records):

>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
edfylryyvgheflefefrpdgklryanmirkeafvhqsvmeelkriiidseimqeddlp
wpppdrvgrqeleivigdehisfttsktgslvdvnrskdpeglrcfyylvqdlkclvfsl
iglhfki

Timeline for d1rk8b_:

• d1rk8b_ first appeared in SCOP 1.67
  
• d1rk8b_ appears in SCOPe 2.04
  
• d1rk8b_ appears in SCOPe 2.06
  
• d1rk8b_ appears in the current release, SCOPe 2.08