SCOPe 2.05: Domain d1rk8a_: 1rk8 A:

Lineage for d1rk8a_ (1rk8 A:)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
   alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

4. Superfamily d.58.7: RNA-binding domain, RBD [54928] (6 families)

5. Family d.58.7.1: Canonical RBD [54929] (68 proteins)

6. Protein RNA-binding protein 8 [89938] (2 species)

7. Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [89939] (3 PDB entries)
   CG8781 protein

8. Domain d1rk8a_: 1rk8 A: [97603]
   Other proteins in same PDB: d1rk8b_, d1rk8c_
   protein/RNA complex; complexed with ca

Details for d1rk8a_

PDB Entry: 1rk8, 1.9 Å

PDB Description: structure of the cytosolic protein pym bound to the mago-y14 core of the exon junction complex

PDB Compounds: (A:) CG8781-PA protein

SCOPe Domain Sequences for d1rk8a_:

Sequence, based on SEQRES records:

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
pqrsvegwilfvtsiheeaqedeiqekfcdygeiknihlnldrrtgfskgyalveyethk
qalaakealngaeimgqtiqvdwcfvkg

Sequence, based on observed residues (ATOM records):

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
pqrsvgwilfvtsiheeaqedeiqekfcdygeiknihlnldrrtgfskgyalveyethkq
alaakealngaeimgqtiqvdwcfvkg

Timeline for d1rk8a_:

• d1rk8a_ first appeared in SCOP 1.67
  
• d1rk8a_ appears in SCOPe 2.04
  
• d1rk8a_ appears in SCOPe 2.06
  
• d1rk8a_ appears in the current release, SCOPe 2.08