SCOPe 2.08: Domain d1q9ya2: 1q9y A:376-902

Lineage for d1q9ya2 (1q9y A:376-902)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (5 proteins)
   in the multi-domain class (e), this applies to domains with different numbers of (sub)domains than the most common domain
   

6. Protein Family B DNA polymerase [56680] (7 species)

7. Species Bacteriophage RB69 [TaxId:12353] [56681] (93 PDB entries)

8. Domain d1q9ya2: 1q9y A:376-902 [96337]
   Other proteins in same PDB: d1q9ya1, d1q9ya3
   protein/DNA complex; complexed with ca, dcp

Details for d1q9ya2

PDB Entry: 1q9y, 2.8 Å

PDB Description: crystal structure of enterobacteria phage rb69 gp43 dna polymerase complexed with 8-oxoguanosine containing dna

PDB Compounds: (A:) DNA polymerase

SCOPe Domain Sequences for d1q9ya2:

Sequence; same for both SEQRES and ATOM records:

>d1q9ya2 e.8.1.1 (A:376-902) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
lkeqnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiag
tfkvaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaa
qrngeiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevag
mtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgte
geafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremce
ymnnkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimglet
qksstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakyd
vggfpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgt
eitdlikddvlhwmdytvllektfikplegftsaakldyekkaslfd

Timeline for d1q9ya2:

• d1q9ya2 first appeared in SCOP 1.67
  
• d1q9ya2 appears in SCOPe 2.07