Lineage for Species: Bacteriophage RB69 [TaxId: 12353]

  1. Root: SCOPe 2.07
  2. 2568173Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
  3. 2571153Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 2571154Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 2571155Family e.8.1.1: DNA polymerase I [56673] (5 proteins)
  6. 2571252Protein Family B DNA polymerase [56680] (7 species)
  7. 2571253Species Bacteriophage RB69 [TaxId:12353] [56681] (93 PDB entries)

PDB entries in Species: Bacteriophage RB69 [TaxId: 12353]:

  1. Domain(s) for 1clq:
  2. Domain(s) for 1ig9:
  3. Domain(s) for 1ih7:
  4. Domain(s) for 1q9x:
    1. 2571331Domain d1q9xa2: 1q9x A:376-903 [96329]
      Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
      protein/DNA complex; complexed with 3dr, ca, dgp, doc
    2. 2571332Domain d1q9xb2: 1q9x B:376-903 [96331]
      Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
      protein/DNA complex; complexed with 3dr, ca, dgp, doc
    3. 2571333Domain d1q9xc2: 1q9x C:376-903 [96333]
      Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
      protein/DNA complex; complexed with 3dr, ca, dgp, doc
    4. 2571334Domain d1q9xd2: 1q9x D:376-903 [96335]
      Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
      protein/DNA complex; complexed with 3dr, ca, dgp, doc
  5. Domain(s) for 1q9y:
  6. Domain(s) for 1rv2:
  7. Domain(s) for 1waf:
    1. 2571349Domain d1wafa2: 1waf A:376-903 [43008]
      Other proteins in same PDB: d1wafa1, d1wafb1
      complexed with gmp
    2. 2571350Domain d1wafb2: 1waf B:376-903 [43009]
      Other proteins in same PDB: d1wafa1, d1wafb1
      complexed with gmp
  8. Domain(s) for 1waj:
  9. Domain(s) for 2atq:
  10. Domain(s) for 2dtu:
    1. 2571336Domain d2dtua2: 2dtu A:376-903 [230660]
      Other proteins in same PDB: d2dtua1, d2dtub1, d2dtuc1, d2dtud1
      automated match to d1ih7a2
      protein/DNA complex
    2. 2571337Domain d2dtub2: 2dtu B:376-903 [230665]
      Other proteins in same PDB: d2dtua1, d2dtub1, d2dtuc1, d2dtud1
      automated match to d1ih7a2
      protein/DNA complex
    3. 2571338Domain d2dtuc2: 2dtu C:376-899 [230668]
      Other proteins in same PDB: d2dtua1, d2dtub1, d2dtuc1, d2dtud1
      automated match to d1ih7a2
      protein/DNA complex
    4. 2571339Domain d2dtud2: 2dtu D:376-898 [230666]
      Other proteins in same PDB: d2dtua1, d2dtub1, d2dtuc1, d2dtud1
      automated match to d1ih7a2
      protein/DNA complex
  11. Domain(s) for 2dy4:
    1. 2571355Domain d2dy4a2: 2dy4 A:376-902 [131883]
      Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
      automated match to d1q9xa2
      protein/DNA complex
    2. 2571356Domain d2dy4b2: 2dy4 B:376-902 [131885]
      Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
      automated match to d1q9xa2
      protein/DNA complex
    3. 2571357Domain d2dy4c2: 2dy4 C:376-900 [131887]
      Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
      automated match to d1ig9a2
      protein/DNA complex
    4. 2571358Domain d2dy4d2: 2dy4 D:376-897 [131889]
      Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
      automated match to d1ig9a2
      protein/DNA complex
  12. Domain(s) for 2oyq:
    1. 2571373Domain d2oyqa2: 2oyq A:376-903 [149071]
      Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1
      automated match to d2ozma2
      protein/DNA complex; complexed with mg, n5p
    2. 2571374Domain d2oyqb2: 2oyq B:376-899 [149073]
      Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1
      protein/DNA complex; complexed with mg, n5p
    3. 2571375Domain d2oyqc2: 2oyq C:376-900 [149075]
      Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1
      automated match to d1ig9a2
      protein/DNA complex; complexed with mg, n5p
    4. 2571376Domain d2oyqd2: 2oyq D:376-898 [149077]
      Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1
      automated match to d1ig9a2
      protein/DNA complex; complexed with mg, n5p
  13. Domain(s) for 2ozm:
  14. Domain(s) for 2ozs:
  15. Domain(s) for 2p5g:
    1. 2571364Domain d2p5ga2: 2p5g A:376-903 [149241]
      Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1
      automated match to d1q9xa2
      protein/DNA complex
    2. 2571365Domain d2p5gb2: 2p5g B:376-899 [149243]
      Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1
      protein/DNA complex
    3. 2571366Domain d2p5gc2: 2p5g C:376-898 [149245]
      Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1
      automated match to d1ig9a2
      protein/DNA complex
    4. 2571367Domain d2p5gd2: 2p5g D:376-899 [149247]
      Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1
      automated match to d1ig9a2
      protein/DNA complex
  16. Domain(s) for 2p5o:
    1. 2571360Domain d2p5oa2: 2p5o A:376-902 [139499]
      Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
      automatically matched to d1clqa2
      protein/DNA complex
    2. 2571361Domain d2p5ob2: 2p5o B:376-901 [139501]
      Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
      automatically matched to d1clqa2
      protein/DNA complex
    3. 2571362Domain d2p5oc2: 2p5o C:376-898 [139503]
      Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
      automatically matched to d1clqa2
      protein/DNA complex
    4. 2571363Domain d2p5od2: 2p5o D:376-896 [139505]
      Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
      automatically matched to d1clqa2
      protein/DNA complex
  17. Domain(s) for 3cfo:
  18. Domain(s) for 3cq8:
  19. Domain(s) for 3l8b:
    1. 2571298Domain d3l8ba2: 3l8b A:376-903 [232822]
      Other proteins in same PDB: d3l8ba1, d3l8bb1
      automated match to d1ih7a2
      protein/DNA complex; complexed with so4
    2. 2571299Domain d3l8bb2: 3l8b B:376-903 [232823]
      Other proteins in same PDB: d3l8ba1, d3l8bb1
      automated match to d1ih7a2
      protein/DNA complex; complexed with so4
  20. Domain(s) for 3lds:
  21. Domain(s) for 3lzi:
  22. Domain(s) for 3lzj:
  23. Domain(s) for 3nae:
  24. Domain(s) for 3nci:
  25. Domain(s) for 3ndk:
  26. Domain(s) for 3ne6:
  27. Domain(s) for 3ngi:
  28. Domain(s) for 3nhg:
  29. Domain(s) for 3qes:
  30. Domain(s) for 3qet:
  31. Domain(s) for 3rma:
    1. 2571369Domain d3rmaa2: 3rma A:376-903 [249141]
      Other proteins in same PDB: d3rmaa1, d3rmab1, d3rmac1, d3rmad1
      automated match to d3l8bb2
      protein/DNA complex
    2. 2571370Domain d3rmab2: 3rma B:376-903 [249143]
      Other proteins in same PDB: d3rmaa1, d3rmab1, d3rmac1, d3rmad1
      automated match to d3l8bb2
      protein/DNA complex
    3. 2571371Domain d3rmac2: 3rma C:376-899 [249145]
      Other proteins in same PDB: d3rmaa1, d3rmab1, d3rmac1, d3rmad1
      automated match to d3l8bb2
      protein/DNA complex
    4. 2571372Domain d3rmad2: 3rma D:376-898 [249147]
      Other proteins in same PDB: d3rmaa1, d3rmab1, d3rmac1, d3rmad1
      automated match to d3l8bb2
      protein/DNA complex
  32. Domain(s) for 3rmb:
    1. 2571351Domain d3rmba2: 3rmb A:376-903 [249149]
      Other proteins in same PDB: d3rmba1, d3rmbb1, d3rmbc1, d3rmbd1
      automated match to d3l8bb2
      protein/DNA complex; complexed with so4
    2. 2571352Domain d3rmbb2: 3rmb B:376-903 [249151]
      Other proteins in same PDB: d3rmba1, d3rmbb1, d3rmbc1, d3rmbd1
      automated match to d3l8bb2
      protein/DNA complex; complexed with so4
    3. 2571353Domain d3rmbc2: 3rmb C:376-900 [249153]
      Other proteins in same PDB: d3rmba1, d3rmbb1, d3rmbc1, d3rmbd1
      automated match to d3l8bb2
      protein/DNA complex; complexed with so4
    4. 2571354Domain d3rmbd2: 3rmb D:376-897 [249155]
      Other proteins in same PDB: d3rmba1, d3rmbb1, d3rmbc1, d3rmbd1
      automated match to d3l8bb2
      protein/DNA complex; complexed with so4
  33. Domain(s) for 3rmc:
    1. 2571381Domain d3rmca2: 3rmc A:376-902 [249157]
      Other proteins in same PDB: d3rmca1, d3rmcb1, d3rmcc1, d3rmcd1
      automated match to d3ncia2
      protein/DNA complex
    2. 2571382Domain d3rmcb2: 3rmc B:376-902 [249159]
      Other proteins in same PDB: d3rmca1, d3rmcb1, d3rmcc1, d3rmcd1
      automated match to d3ncia2
      protein/DNA complex
    3. 2571383Domain d3rmcc2: 3rmc C:376-901 [249161]
      Other proteins in same PDB: d3rmca1, d3rmcb1, d3rmcc1, d3rmcd1
      automated match to d3ncia2
      protein/DNA complex
    4. 2571384Domain d3rmcd2: 3rmc D:376-897 [249163]
      Other proteins in same PDB: d3rmca1, d3rmcb1, d3rmcc1, d3rmcd1
      automated match to d3ncia2
      protein/DNA complex
  34. Domain(s) for 3rmd:
    1. 2571377Domain d3rmda2: 3rmd A:376-902 [249165]
      Other proteins in same PDB: d3rmda1, d3rmdb1, d3rmdc1, d3rmdd1
      automated match to d3l8bb2
      protein/DNA complex; complexed with dtp
    2. 2571378Domain d3rmdb2: 3rmd B:376-902 [249167]
      Other proteins in same PDB: d3rmda1, d3rmdb1, d3rmdc1, d3rmdd1
      automated match to d3l8bb2
      protein/DNA complex; complexed with dtp
    3. 2571379Domain d3rmdc2: 3rmd C:376-901 [249169]
      Other proteins in same PDB: d3rmda1, d3rmdb1, d3rmdc1, d3rmdd1
      automated match to d3l8bb2
      protein/DNA complex; complexed with dtp
    4. 2571380Domain d3rmdd2: 3rmd D:376-897 [249171]
      Other proteins in same PDB: d3rmda1, d3rmdb1, d3rmdc1, d3rmdd1
      automated match to d3l8bb2
      protein/DNA complex; complexed with dtp
  35. Domain(s) for 3s9h:
  36. Domain(s) for 3scx:
  37. Domain(s) for 3si6:
  38. Domain(s) for 3sjj:
  39. Domain(s) for 3snn:
  40. Domain(s) for 3spy:
  41. Domain(s) for 3spz:
  42. Domain(s) for 3sq0:
  43. Domain(s) for 3sq1:
  44. Domain(s) for 3sq2:
  45. Domain(s) for 3sq4:
  46. Domain(s) for 3sun:
  47. Domain(s) for 3suo:
  48. Domain(s) for 3sup:
  49. Domain(s) for 3suq:
  50. Domain(s) for 3tae:
    1. 2571325Domain d3taea2: 3tae A:376-903 [249842]
      Other proteins in same PDB: d3taea1, d3taeb1, d3taec1, d3taed1
      automated match to d3l8bb2
      protein/DNA complex; complexed with so4
    2. 2571326Domain d3taeb2: 3tae B:376-901 [249844]
      Other proteins in same PDB: d3taea1, d3taeb1, d3taec1, d3taed1
      automated match to d3l8bb2
      protein/DNA complex; complexed with so4
    3. 2571327Domain d3taec2: 3tae C:376-903 [249846]
      Other proteins in same PDB: d3taea1, d3taeb1, d3taec1, d3taed1
      automated match to d3l8bb2
      protein/DNA complex; complexed with so4
    4. 2571328Domain d3taed2: 3tae D:376-898 [249848]
      Other proteins in same PDB: d3taea1, d3taeb1, d3taec1, d3taed1
      automated match to d3l8bb2
      protein/DNA complex; complexed with so4
  51. Domain(s) for 3tag:
    1. 2571342Domain d3taga2: 3tag A:376-903 [249850]
      Other proteins in same PDB: d3taga1, d3taga3, d3tagb1, d3tagc1, d3tagd1
      automated match to d3l8bb2
      protein/DNA complex; complexed with so4
    2. 2571343Domain d3tagb2: 3tag B:376-901 [249852]
      Other proteins in same PDB: d3taga1, d3taga3, d3tagb1, d3tagc1, d3tagd1
      automated match to d3l8bb2
      protein/DNA complex; complexed with so4
    3. 2571344Domain d3tagc2: 3tag C:376-903 [249854]
      Other proteins in same PDB: d3taga1, d3taga3, d3tagb1, d3tagc1, d3tagd1
      automated match to d3l8bb2
      protein/DNA complex; complexed with so4
    4. 2571345Domain d3tagd2: 3tag D:376-898 [249856]
      Other proteins in same PDB: d3taga1, d3taga3, d3tagb1, d3tagc1, d3tagd1
      automated match to d3l8bb2
      protein/DNA complex; complexed with so4
  52. Domain(s) for 3uiq:
  53. Domain(s) for 4dtj:
  54. Domain(s) for 4dtm:
  55. Domain(s) for 4dtn:
  56. Domain(s) for 4dto:
  57. Domain(s) for 4dtp:
  58. Domain(s) for 4dtr:
  59. Domain(s) for 4dts:
  60. Domain(s) for 4dtu:
  61. Domain(s) for 4dtx:
  62. Domain(s) for 4du1:
  63. Domain(s) for 4du3:
  64. Domain(s) for 4du4:
  65. Domain(s) for 4e3s:
  66. Domain(s) for 4fj5:
  67. Domain(s) for 4fj7:
  68. Domain(s) for 4fj8:
  69. Domain(s) for 4fj9:
  70. Domain(s) for 4fjg:
  71. Domain(s) for 4fjh:
  72. Domain(s) for 4fji:
  73. Domain(s) for 4fjj:
  74. Domain(s) for 4fjk:
  75. Domain(s) for 4fjl:
  76. Domain(s) for 4fjm:
  77. Domain(s) for 4fjn:
  78. Domain(s) for 4fjx:
  79. Domain(s) for 4fk0:
  80. Domain(s) for 4fk2:
  81. Domain(s) for 4fk4:
  82. Domain(s) for 4i9l:
  83. Domain(s) for 4j2a:
  84. Domain(s) for 4j2b:
  85. Domain(s) for 4j2e:
  86. Domain(s) for 4khn:
    1. 2571323Domain d4khna2: 4khn A:376-901 [235166]
      Other proteins in same PDB: d4khna1, d4khnb1
      automated match to d4khnb2
      protein/DNA complex; complexed with ca, gol, na, so4, xg4; mutant
    2. 2571324Domain d4khnb2: 4khn B:376-901 [228219]
      Other proteins in same PDB: d4khna1, d4khnb1
      automated match to d1ih7a2
      protein/DNA complex; complexed with ca, gol, na, so4, xg4; mutant
  87. Domain(s) for 4khq:
  88. Domain(s) for 4khs:
  89. Domain(s) for 4khu:
  90. Domain(s) for 4khw:
  91. Domain(s) for 4khy:
  92. Domain(s) for 4ki4:
  93. Domain(s) for 4ki6:

More info for Species Bacteriophage RB69 [TaxId:12353] from e.8.1.1 Family B DNA polymerase

Timeline for Species Bacteriophage RB69 [TaxId:12353] from e.8.1.1 Family B DNA polymerase: