SCOPe 2.04: Domain d1pp8p_: 1pp8 P:

Lineage for d1pp8p_ (1pp8 P:)

1. Root: SCOPe 2.04

2. Class a: All alpha proteins [46456] (285 folds)

3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down

4. Superfamily a.4.5: "Winged helix" DNA-binding domain [46785] (85 families)
   contains a small beta-sheet (wing)

5. Family a.4.5.44: 39 kda initiator binding protein, IBP39, N-terminal domain [101045] (1 protein)
   automatically mapped to Pfam PF10416

6. Protein 39 kda initiator binding protein, IBP39, N-terminal domain [101046] (1 species)

7. Species Trichomonas vaginalis [TaxId:5722] [101047] (2 PDB entries)

8. Domain d1pp8p_: 1pp8 P: [94977]
   protein/DNA complex; complexed with so4

Details for d1pp8p_

PDB Entry: 1pp8, 3.05 Å

PDB Description: crystal structure of the T. vaginalis IBP39 Initiator binding domain (IBD) bound to the alpha-SCS Inr element

PDB Compounds: (P:) 39 kDa initiator binding protein

SCOPe Domain Sequences for d1pp8p_:

Sequence; same for both SEQRES and ATOM records:

>d1pp8p_ a.4.5.44 (P:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}
mdsndleasftsrlppeivaalkrkssrdpnsrfprklhmlltylasnpqleeeiglswi
sdtefkmkkknvalvmgiklntlnvnlrdlafeqlqhdkggwtqwkrsgftrnsvfed

Timeline for d1pp8p_:

• d1pp8p_ first appeared in SCOP 1.67
  
• d1pp8p_ appears in SCOPe 2.03
  
• d1pp8p_ appears in SCOPe 2.05
  
• d1pp8p_ appears in the current release, SCOPe 2.08