SCOPe 2.02: Domain d1p4dc_: 1p4d C:

Lineage for d1p4dc_ (1p4d C:)

1. Root: SCOPe 2.02

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.89: Origin of replication-binding domain, RBD-like [55463] (1 superfamily)
   alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325

4. Superfamily d.89.1: Origin of replication-binding domain, RBD-like [55464] (6 families)

5. Family d.89.1.5: Relaxase domain [103120] (3 proteins)
   circular permutation of the common fold

6. Protein F factor TraI relaxase [103121] (1 species)

7. Species Escherichia coli [TaxId:562] [103122] (1 PDB entry)

8. Domain d1p4dc_: 1p4d C: [94103]
   complexed with edo, mg

Details for d1p4dc_

PDB Entry: 1p4d, 2.6 Å

PDB Description: f factor trai relaxase domain

PDB Compounds: (C:) TraI protein

SCOPe Domain Sequences for d1p4dc_:

Sequence, based on SEQRES records:

>d1p4dc_ d.89.1.5 (C:) F factor TraI relaxase {Escherichia coli [TaxId: 562]}
mmsiaqvrsagsagnyytdkdnyyvlgsmgerwagrgaeqlglqgsvdkdvftrllegrl
pdgadlsrmqdgsnrhrpgydltfsapksvsmmamlggdkrlidahnqavdfavrqveal
astrvmtdgqsetvltgnlvmalfnhdtsrdqepqlhthavvanvtqhngewktlssdkv
gktgfienvyanqiafgrlyreklkeqvealgyetevvgkhgmwempgvpveafsgrsqt
ireavgedaslksrdvaaldtrkskqhvdpeikmaewmqtlketgfdirayrdaadqrad
lrtltpg

Sequence, based on observed residues (ATOM records):

>d1p4dc_ d.89.1.5 (C:) F factor TraI relaxase {Escherichia coli [TaxId: 562]}
mmsiaqvrsagsagnyytdkdnyyvlgsmgerwagrgaeqlglqgsvdkdvftrllegrl
pdgadlsrmqdgsnrhrpgydltfsapksvsmmamlggdkrlidahnqavdfavrqveal
astrvmtdgqsetvltgnlvmalfnhdtsrdqepqlhthavvanvtqhngewktlssdkv
gktgfienvyanqiafgrlyreklkeqvealgyetevvgkhgmwempgvpveafshvdpe
ikmaewmqtlketgfdirayrdaadqradlrtltpg

Timeline for d1p4dc_:

• d1p4dc_ first appeared in SCOP 1.67
  
• d1p4dc_ appears in SCOPe 2.01
  
• d1p4dc_ appears in SCOPe 2.03
  
• d1p4dc_ appears in the current release, SCOPe 2.08