SCOPe 2.07: Domain d1ms5b1: 1ms5 B:409-632

Lineage for d1ms5b1 (1ms5 B:409-632)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.29: Concanavalin A-like lectins/glucanases [49898] (1 superfamily)
   sandwich; 12-14 strands in 2 sheets; complex topology

4. Superfamily b.29.1: Concanavalin A-like lectins/glucanases [49899] (26 families)

5. Family b.29.1.15: Trypanosoma sialidase, C-terminal domain [82038] (1 protein)

6. Protein Trypanosoma sialidase, C-terminal domain [82039] (2 species)

7. Species Trypanosoma cruzi [TaxId:5693] [89271] (13 PDB entries)
   Uniprot Q26966

8. Domain d1ms5b1: 1ms5 B:409-632 [85078]
   Other proteins in same PDB: d1ms5a2, d1ms5b2

Details for d1ms5b1

PDB Entry: 1ms5, 2 Å

PDB Description: triclinic form of trypanosoma cruzi trans-sialidase, soaked with n- acetylneuraminyl-a-2,3-thio-galactoside (na-s-gal)

PDB Compounds: (B:) Trans-sialidase

SCOPe Domain Sequences for d1ms5b1:

Sequence, based on SEQRES records:

>d1ms5b1 b.29.1.15 (B:409-632) Trypanosoma sialidase, C-terminal domain {Trypanosoma cruzi [TaxId: 5693]}
gcgpavttvglvgflshsatktewedayrcvnastanaervpnglkfagvgggalwpvsq
qgqnqryffanhaftlvasvtihevpkgaspllgasldssggkkllglsydkrhqwqpiy
gstpvtptgswemgkryhvvltmankigsvyidgeplegsgqtvvpdertpdishfyvgg
ykrsgmptdsrvtvnnvllynrqlnaeeirtlflsqdligteah

Sequence, based on observed residues (ATOM records):

>d1ms5b1 b.29.1.15 (B:409-632) Trypanosoma sialidase, C-terminal domain {Trypanosoma cruzi [TaxId: 5693]}
gcgpavttvglvgflshsatktewedayrcvnastanaervpnglkfagvgggalwpvsq
qgqnqryffanhaftlvasvtihevpkgaspllgasldssggkkllglsydkrhqwqpiy
gstpvtptgswemgkryhvvltmankigsvyidgeplegsgqtvvpertpdishfyvggy
krsgmptdsrvtvnnvllynrqlnaeeirtlflsqdligteah

Timeline for d1ms5b1:

• d1ms5b1 first appeared in SCOP 1.65
  
• d1ms5b1 appears in SCOPe 2.06
  
• d1ms5b1 appears in the current release, SCOPe 2.08