SCOPe 2.04: Domain d1d4m.1: 1d4m 4:,2:

Lineage for d1d4m.1 (1d4m 4:,2:)

1. Root: SCOPe 2.04

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins)
   the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
   there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)

6. Protein Human enterovirus B coat proteins [88635] (4 species)

7. Species Human coxsackievirus A9 [TaxId:12067] [49683] (1 PDB entry)

8. Domain d1d4m.1: 1d4m 4:,2: [83046]
   complexed with myr, w71

Details for d1d4m.1

PDB Entry: 1d4m, 2.9 Å

PDB Description: the crystal structure of coxsackievirus a9 to 2.9 a resolution

PDB Compounds: (2:) protein (coxsackievirus a9), (4:) protein (coxsackievirus a9)

SCOPe Domain Sequences for d1d4m.1:

Sequence, based on SEQRES records:

>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human coxsackievirus A9 [TaxId: 12067]}
gaqvstqktgahetslsaagnsiihytninyykdaasnsanrqdftqdpskftepvkdvm
ikslpalnXsdrvrsitlgnstittqecanvvvgygrwptylrddeataedqptqpdvat
crfytldsikwekgsvgwwwkfpealsdmglfgqnmqyhylgragytihvqcnaskfhqg
cllvvcvpeaemggavvgqafsatamangdkayeftsatqsdqtkvqtaihnagmgvgvg
nltiyphqwinlrtnnsativmpyinsvpmdnmfrhynftlmvipfvkldyadtastyvp
itvtvapmcaeynglrlaqaq

Sequence, based on observed residues (ATOM records):

>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human coxsackievirus A9 [TaxId: 12067]}
gaqvstqktgahetsiihytninyykdaasnsanrqdftqdpskftepvkdvmikslpal
nXsdrvrsitlgnstittqecanvvvgygrwptylrddeataedqptqpdvatcrfytld
sikwekgsvgwwwkfpealsdmglfgqnmqyhylgragytihvqcnaskfhqgcllvvcv
peaemggavvgqafsatamangdkayeftsatqsdqtkvqtaihnagmgvgvgnltiyph
qwinlrtnnsativmpyinsvpmdnmfrhynftlmvipfvkldyadtastyvpitvtvap
mcaeynglrlaqaq

Timeline for d1d4m.1:

• d1d4m.1 first appeared in SCOP 1.65
  
• d1d4m.1 appears in SCOPe 2.03
  
• d1d4m.1 appears in SCOPe 2.05
  
• d1d4m.1 appears in the current release, SCOPe 2.08