SCOPe 2.05: Domain d1jvaa2: 1jva A:464-581

Lineage for d1jvaa2 (1jva A:464-581)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.95: Homing endonuclease-like [55603] (2 superfamilies)
   alpha-beta(2)-alpha-beta(2)-alpha; 2 layers: a/b; antiparallel sheet 1243

4. Superfamily d.95.2: Homing endonucleases [55608] (3 families)

5. Family d.95.2.2: Intein endonuclease [55614] (2 proteins)
   duplication: contains tandem repeat of this fold

6. Protein VMA1-derived endonuclease (VDE) PI-SceI [55615] (1 species)
   homing endonuclease with protein splicing activity

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [55616] (7 PDB entries)
   Uniprot P17255 284-737

8. Domain d1jvaa2: 1jva A:464-581 [77176]
   Other proteins in same PDB: d1jvaa1, d1jvab1

Details for d1jvaa2

PDB Entry: 1jva, 2.1 Å

PDB Description: crystal structure of the vma1-derived endonuclease bearing the n and c extein propeptides

PDB Compounds: (A:) vma1-derived homing endonuclease x10sss

SCOPe Domain Sequences for d1jvaa2:

Sequence, based on SEQRES records:

>d1jvaa2 d.95.2.2 (A:464-581) VMA1-derived endonuclease (VDE) PI-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
pilyendhffdymqkskfhltiegpkvlayllglwigdglsdratfsvdsrdtslmervt
eyaeklnlcaeykdrkepqvaktvnlyskvvrgngirnnlntenplwdaivglgflkd

Sequence, based on observed residues (ATOM records):

>d1jvaa2 d.95.2.2 (A:464-581) VMA1-derived endonuclease (VDE) PI-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
pilyendhffdymqkskfhltiegpkvlayllglwigdglsdratfsvdsrdtslmervt
eyaeklnlcaeykdrkepqvaktvnlyskvenplwdaivglgflkd

Timeline for d1jvaa2:

• d1jvaa2 first appeared in SCOP 1.63
  
• d1jvaa2 appears in SCOPe 2.04
  
• d1jvaa2 appears in SCOPe 2.06
  
• d1jvaa2 appears in the current release, SCOPe 2.08