SCOPe 2.06: Domain d1kbub2: 1kbu B:130-341

Lineage for d1kbub2 (1kbu B:130-341)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.163: DNA breaking-rejoining enzymes [56348] (1 superfamily)
   core: alpha3-beta3-alpha4; one side of beta-sheet is exposed

4. Superfamily d.163.1: DNA breaking-rejoining enzymes [56349] (2 families)

5. Family d.163.1.1: Lambda integrase-like, catalytic core [56350] (6 proteins)

6. Protein Cre recombinase [56355] (1 species)

7. Species Bacteriophage P1 [TaxId:10678] [56356] (20 PDB entries)
   Uniprot P06956 20-341

8. Domain d1kbub2: 1kbu B:130-341 [72287]
   Other proteins in same PDB: d1kbua1, d1kbub1
   protein/DNA complex

Details for d1kbub2

PDB Entry: 1kbu, 2.2 Å

PDB Description: cre recombinase bound to a loxp holliday junction

PDB Compounds: (B:) cre recombinase

SCOPe Domain Sequences for d1kbub2:

Sequence, based on SEQRES records:

>d1kbub2 d.163.1.1 (B:130-341) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}
rakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtd
ggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcrvrkngvaa
psatsqlstralegifeathrliygakddsgqrylawsghsarvgaardmaragvsipei
mqaggwtnvnivmnyirnldsetgamvrlled

Sequence, based on observed residues (ATOM records):

>d1kbub2 d.163.1.1 (B:130-341) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}
rakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtd
ggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcrvrkngvaa
psatsqlstralegifeathrliygakddsgqrylawsghsarvgaardmaragvsipei
mqaggwtnvnivmnyirnlgamvrlled

Timeline for d1kbub2:

• d1kbub2 first appeared in SCOP 1.61
  
• d1kbub2 appears in SCOPe 2.05
  
• d1kbub2 appears in SCOPe 2.07
  
• d1kbub2 appears in the current release, SCOPe 2.08