SCOP 1.73: Domain d1jcyb_: 1jcy B:

Lineage for d1jcyb_ (1jcy B:)

1. Root: SCOP 1.73

2. Class c: Alpha and beta proteins (a/b) [51349] (141 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.10: Aldolase [51569] (8 families)
   Common fold covers whole protein structure

5. Family c.1.10.4: Class I DAHP synthetase [51599] (2 proteins)

6. Protein 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) [51602] (3 species)

7. Species Aquifex aeolicus [TaxId:63363] [63922] (18 PDB entries)

8. Domain d1jcyb_: 1jcy B: [66513]
   complexed with cd, pep, po4, r5p

Details for d1jcyb_

PDB Entry: 1jcy, 1.9 Å

PDB Description: aquifex aeolicus kdo8p synthase in complex with r5p, pep and cadmium

PDB Compounds: (B:) 2-dehydro-3-deoxyphosphooctonate aldolase

SCOP Domain Sequences for d1jcyb_:

Sequence, based on SEQRES records:

>d1jcyb_ c.1.10.4 (B:) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]}
kflviagpcaieseelllkvgeeikrlsekfkevefvfkssfdkanrssihsfrghgley
gvkalrkvkeefglkittdiheswqaepvaevadiiqipaflcrqtdlllaaaktgravn
vkkgqflapwdtknvveklkfggakeiyltergttfgynnlvvdfrslpimkqwakviyd
athsvqlpgglgdksggmrefifpliraavavgcdgvfmethpepekalsdastqlplsq
legiieaileirevaskyyeti

Sequence, based on observed residues (ATOM records):

>d1jcyb_ c.1.10.4 (B:) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]}
kflviagpcaieseelllkvgeeikrlsekfkevefvfkssfdkanrssihsfrghgley
gvkalrkvkeefglkittdiheswqaepvaevadiiqipaflcrqtdlllaaaktgravn
vkkgqflapwdtknvveklkfggakeiyltergttfgynnlvvdfrslpimkqwakviyd
athsvqlpggmrefifpliraavavgcdgvfmethpepekalsdastqlplsqlegiiea
ileirevaskyyeti

Timeline for d1jcyb_:

• d1jcyb_ first appeared in SCOP 1.59
  
• d1jcyb_ appears in SCOP 1.71
  
• d1jcyb_ appears in SCOP 1.75
  
• d1jcyb_ appears in the current release, SCOPe 2.08