Lineage for Class j: Peptides

  1. Root: SCOPe 2.07
  2. 2596047Class j: Peptides [58231] (148 folds)

Folds:

  1. 2596048j.1: Membrane ion channel-forming peptide antibiotics containing D-aminoacids [58232] (1 superfamily)
  2. 2596130j.2: Lantibiotic peptides [58243] (1 superfamily)
    peptide antibiotic
  3. 2596152j.3: Antimicrobial beta-hairpin [58251] (1 superfamily)
    contains beta-hairpin crosslinked by disulfide bridge(s)
  4. 2596200j.4: Antimicrobial helix [58268] (1 superfamily)
    antibiotic peptide
  5. 2596252j.5: Macrocyclic bacteriocins [58278] (1 superfamily)
    macrocyclic antimicrobial peptide; bacteriocin
  6. 2596266j.6: Peptide hormones [58283] (1 superfamily)
    contains one alpha-helix
  7. 2596365j.7: delta toxin-like [58307] (3 superfamilies)
    single alpha helix
  8. 2596391j.8: PSP1-like [58312] (1 superfamily)
  9. 2596415j.9: Arg-rich RNA binding peptides [58321] (7 superfamilies)
  10. 2596509j.10: DNA-binding domains of HMG-I(Y) [58348] (1 superfamily)
  11. 2596518j.11: VPR protein fragments [58353] (1 superfamily)
  12. 2596536j.12: Inactivation gate of potassium and sodium channels [58358] (1 superfamily)
  13. 2596555j.13: Coagulation factor VIII, membrane-binding peptide [58368] (1 superfamily)
  14. 2596562j.14: Phosphocholine cytidylyltransferase membrane-binding peptides [58373] (1 superfamily)
  15. 2596569j.15: Parathyroid hormone fragments (residues between 1 and 39) [58378] (1 superfamily)
  16. 2596594j.16: Corticotropin releasing hormone [58384] (1 superfamily)
  17. 2596607j.17: Liposaccharide-binding protein CAP18 (residues 106-137) [58389] (1 superfamily)
  18. 2596613j.18: Polymorphic antigen SPAM-H1 (residues 90-127) [58394] (1 superfamily)
  19. 2596619j.19: Insect toxins [58399] (1 superfamily)
  20. 2596634j.20: Tertiapin [58404] (1 superfamily)
    small disulfide-rich peptide
  21. 2596640j.21: Antifreeze polypeptide HPLC-6 [58409] (1 superfamily)
  22. 2596650j.22: Troponin I fragments [58414] (1 superfamily)
  23. j.23: Pilin fragments [58420] (1 superfamily)
  24. 2596677j.24: RP71935 [58427] (1 superfamily)
  25. 2596684j.25: Atrial natriuretic peptide [58432] (1 superfamily)
  26. j.26: Compstatin [58437] (1 superfamily)
  27. j.27: Membrane-bound antimicrobial peptides [58442] (1 superfamily)
  28. 2596709j.28: Endothelin-like [58449] (1 superfamily)
    small disulfide-rich
  29. j.29: Heat-stable enterotoxin (HSE) [58457] (1 superfamily)
  30. 2596739j.30: Conotoxins [58464] (1 superfamily)
    disulfide-rich fold
  31. 2596829j.31: Conantokin [58494] (1 superfamily)
  32. j.32: Contryphan-R [58502] (1 superfamily)
  33. 2596852j.33: Kappa-hefutoxin-like [58507] (2 superfamilies)
    hairpin of two short helices crosslinked with two disulfides
  34. j.34: Bradykinin [58512] (1 superfamily)
  35. 2596872j.35: Transmembrane helical fragments [58517] (1 superfamily)
  36. 2597024j.36: Topogenic peptides [58555] (4 superfamilies)
  37. 2597045j.37: Phospholamban fragments [58568] (1 superfamily)
  38. j.38: Fragments of bowman-birk inhibitor [58574] (1 superfamily)
  39. 2597064j.39: Fragments of apolipoproteins [58579] (1 superfamily)
  40. 2597094j.40: Transactivation protein TAT [58593] (1 superfamily)
  41. 2597106j.41: Proline pipe [58599] (1 superfamily)
  42. 2597112j.42: Amyloid peptides [58604] (1 superfamily)
  43. 2597142j.43: Gelsolin fragment (residues 150-169) [58609] (1 superfamily)
  44. j.44: Acetylcholine receptor fragment (residues alpha 67-76) [58614] (1 superfamily)
  45. 2597155j.45: Thrombomodulin EGF domain fragment (residues 409-426) [58619] (1 superfamily)
  46. 2597163j.47: Capsid protein major homology region peptide analog [58629] (1 superfamily)
  47. 2597171j.48: CD4 and CD8 receptor regions [58635] (1 superfamily)
  48. 2597181j.49: Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv [58640] (1 superfamily)
  49. 2597188j.50: GroES fragments [58645] (1 superfamily)
  50. 2597198j.51: cAMP and cGMP phosphodiesterase (PDE) fragments [58650] (1 superfamily)
  51. 2597207j.52: HIV-1 Nef protein fragments [58657] (1 superfamily)
  52. 2597215j.53: HIV-1 envelope gp120 protein fragments [58662] (1 superfamily)
  53. 2597227j.54: Hepatitis C virus N-terminal capsid protein fragment 2-45 [58667] (1 superfamily)
  54. 2597233j.55: P27(KIP1) fragment 22-106 [58672] (1 superfamily)
  55. j.56: Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350) [58677] (1 superfamily)
  56. j.57: alpha-lactalbumin peptide model [58682] (1 superfamily)
  57. 2597252j.58: Coat protein-binding domain of bacteriophage P22 scaffolding protein [58687] (1 superfamily)
  58. j.59: Immunoreceptor tyrosine kinase activation motif, ITAM [58692] (1 superfamily)
  59. 2597265j.60: Integrin fragments [58697] (1 superfamily)
  60. 2597288j.61: Human glutathione reductase (HGR) inhibitor [58702] (1 superfamily)
  61. j.62: Small subunit C-terminal inhibitory peptide of ribonucleotide reductase [58707] (1 superfamily)
  62. j.63: Histone H3 C-terminal fragment 130-135 [58712] (1 superfamily)
  63. 2597310j.64: Smad-binding domain of Sara [58717] (1 superfamily)
  64. 2597318j.65: Peptide derived from p-21 activated kinase [58722] (1 superfamily)
  65. 2597326j.66: pak1 autoregulatory domain [58728] (1 superfamily)
  66. 2597333j.67: Translocated intimin receptor (tir) intimin-binding domain [58733] (1 superfamily)
  67. 2597339j.68: Fragments of the L-type calcium channel alpha subunit Cav.1 (dihydropyridine receptor) [58738] (1 superfamily)
  68. 2597354j.69: Tumor suppressor p53 fragments [58743] (1 superfamily)
  69. j.70: FxFG nucleoporin repeats [58748] (1 superfamily)
  70. 2597372j.71: beta-Catenine bound non-globular protein regions [58753] (1 superfamily)
  71. j.73: VMIP-II fragment [58763] (1 superfamily)
  72. j.74: Papillomavirus e6-interacting peptide of e6ap [58768] (1 superfamily)
  73. 2597403j.75: Isolated insulin B-chain [58773] (1 superfamily)
  74. j.76: Ubiquitin fragments [58778] (1 superfamily)
  75. 2597477j.77: alpha-helical hairpin of p8mtcp1 [58783] (1 superfamily)
  76. 2597483j.78: C-terminal fragment of thermolysin [63387] (1 superfamily)
  77. 2597490j.79: Influenza hemagglutinin fragments [64631] (1 superfamily)
  78. 2597500j.80: Syndecan-4 cytoplasmic domain [64638] (1 superfamily)
  79. 2597509j.81: Pituitary adenylate cyclase activating polypeptide, pacap21 [64643] (1 superfamily)
  80. 2597515j.82: Cholecystokinin receptor fragments [64648] (1 superfamily)
  81. j.83: Trypsin inhibitor SFTIf-1 [64653] (1 superfamily)
  82. 2597531j.84: Ribosomal protein L10 [64658] (1 superfamily)
  83. 2597578j.85: HIV-1 gp41 fragments [70010] (1 superfamily)
  84. 2597603j.86: Actin-binding peptides [70017] (1 superfamily)
  85. 2597612j.87: Rack1 interaction site of the CAMP-specific phosphodiesterase pde4d5. [70022] (1 superfamily)
  86. 2597618j.88: Prepeptide of 5-ALAS [70027] (1 superfamily)
  87. 2597625j.89: the cytoplasmic N-terminus of the bk beta-subunit kcnmb2 [70032] (1 superfamily)
  88. 2597631j.90: Prion protein fragments [70037] (1 superfamily)
  89. 2597644j.91: Tumor suppressor protein p19-ARF fragment [70042] (1 superfamily)
  90. j.92: Antennapedia homeodomain fragments [70047] (1 superfamily)
  91. 2597659j.93: Sheep myeloid antimicrobial peptide SMAP29 based peptides [75751] (1 superfamily)
  92. 2597668j.94: alpha-2a adrenergic receptor pepride t3-i2 [75756] (1 superfamily)
  93. 2597677j.95: Catestatin fragment from chromogranin A [75761] (1 superfamily)
  94. 2597684j.96: Transactivation domain [81275] (1 superfamily)
  95. 2597697j.97: BRCA2 BRC4 repeat [82985] (1 superfamily)
  96. j.98: Bhpbr3, the Baff-binding loop of br3 embedded in a beta-hairpin peptide [82992] (1 superfamily)
  97. 2597709j.99: N-terminal fragment of gastric H/K-ATPase [82997] (1 superfamily)
  98. 2597716j.100: Barstar fragment [83002] (1 superfamily)
  99. j.101: Cannabinoid receptor 1 (CB1) fragment [83007] (1 superfamily)
  100. j.102: Angiotensin [90269] (1 superfamily)
  101. j.103: Transducin gamma-t1 subunit rhodopsin bound fragment (res. 60-71) [90290] (1 superfamily)
  102. 2597744j.104: TBP-binding domain of the transcription factor IIIb Brf1 subunit [90297] (1 superfamily)
  103. 2597753j.105: Ubiquitin interacting motif (UIM) [90302] (1 superfamily)
  104. 2597766j.106: Leucocin-like bacteriocin [100898] (1 superfamily)
    consists of a conserved, disulfide-containing N-terminal region (forming a beta-sheet) and a C-terminal helix
  105. 2597783j.107: Penaeidin-3a [103726] (1 superfamily)
  106. 2597789j.108: Proto-oncogene tyrosine-protein kinase lck CD4/CD8 interacting region [103748] (1 superfamily)
  107. j.109: Metal-binding peptide from MerP [103758] (1 superfamily)
  108. j.110: Marinostatin, MstI [103763] (1 superfamily)
  109. j.111: Cross-reactive peptides from 60S acidic ribosomal protein p2 [103768] (1 superfamily)
  110. 2597816j.112: Nuclear receptor coactivator Src-1 [100901] (1 superfamily)
  111. 2597825j.113: NTR, cyclotide processing element [111516] (1 superfamily)
  112. 2597834j.114: HMG-box transcription factor 1 fragments [111523] (1 superfamily)
  113. j.115: MAD protein fragments [111528] (1 superfamily)
  114. 2597846j.116: Fragments of TNF receptors [111533] (1 superfamily)
  115. 2597852j.117: Ezrin-radixin-moesin binding phosphoprotein 50 (ebp50) fragments [111538] (1 superfamily)
  116. 2597858j.118: Ribosomal protein L34p [144320] (1 superfamily)
    non-globular, mainly alpha-helical
  117. 2597894j.119: Retinoblastoma-associated protein RB1 fragments [144325] (1 superfamily)
  118. 2597900j.120: Genome linked protein vpg [144330] (1 superfamily)
  119. 2597907j.121: Programmed cell death protein 5 fragments [144335] (1 superfamily)
  120. 2597913j.122: Ribosomal protein S21p [161307] (1 superfamily)
    non-globular, mainly alpha-helical
  121. j.123: Transforming growth factor alpha fragments [254105] (1 superfamily)
  122. j.124: YefM fragments [254106] (1 superfamily)
  123. j.125: IAP fragments [254107] (1 superfamily)
  124. 2597961j.126: cAMP-dependent protein kinase inhibitor [254108] (1 superfamily)
  125. 2597972j.127: Complement system alpha-prime linker [254110] (1 superfamily)
  126. 2597982j.128: Complement system anchor region [254111] (1 superfamily)
  127. 2597992j.129: DNMT1 CXXC-BAH1 linker domain-like [267592] (1 superfamily)
  128. j.130: STM1 N-terminal region [267593] (1 superfamily)
    Pfam PF09598; elongated structure binds ribosome in mRNA entry tunnel and elsewhere (PubMed 22096102)
  129. 2598007j.131: Filamin fragments [267594] (1 superfamily)
  130. j.132: Mixed lineage leukaemia protein (MLL) fragments [310557] (1 superfamily)
  131. j.133: RNA polymerase II fragments [310558] (1 superfamily)
  132. 2598025j.134: C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like [310563] (1 superfamily)
    long peptide binds to AT, KS-to-AT, and KS domains of DEBS
  133. 2598042j.135: Sac3 CID region-like [310572] (1 superfamily)
  134. 2598052j.136: SEM1 fragments [345900] (1 superfamily)
  135. 2598060j.137: Pre-mRNA splicing factor Prp45-like [345901] (1 superfamily)
    Extended, mostly disordered
  136. j.138: Pre-mRNA splicing factor Cdc5-like [345902] (1 superfamily)
    Extended helical fragments, mostly disordered
  137. 2598072j.139: Pre-mRNA splicing factor Prp17-like [345903] (1 superfamily)
    Extended fragments made of helices and loops
  138. 2598080j.140: Pre-mRNA splicing factor Cwf15-like [345904] (1 superfamily)
    Extended fragments made of helices and loops, mostly disordered
  139. 2598086j.141: Pre-mRNA splicing factor Syf2-like [345905] (1 superfamily)
    Extended mostly helical fragments
  140. 2598092j.142: Pre-mRNA splicing factor Cwc25-like [345906] (1 superfamily)
    Helical fragments from N-terminus
  141. 2598098j.143: Pre-mRNA splicing factor Snu66-like [345907] (1 superfamily)
    Extended helical fragments
  142. 2598106j.144: Spliceosomal U4/U6 small nuclear ribonucleoprotein Prp3 N-terminal domain-like [345908] (1 superfamily)
    Extended helices and loops that interact with other spliceosome components
  143. 2598114j.145: Microfibrillar-associated protein 1 fragment [345909] (1 superfamily)
  144. 2598120j.146: Splicing factor 3B subunit 5 fragment [345910] (1 superfamily)
  145. 2598126j.147: Pre-mRNA splicing factor Cwc21 fragment [345911] (1 superfamily)
  146. 2598132j.148: Splicing factor 3B subunit 1 fragment [345912] (1 superfamily)
  147. 2598139j.149: Spliceosomal U4/U6 small nuclear ribonucleoprotein Prp31 C-terminal domain-like [345913] (1 superfamily)
    Extended helices and loops that interact with other spliceosome components
  148. 2598147j.150: Pre-mRNA splicing factor Slu7 fragments [345914] (1 superfamily)

More info for Class j: Peptides

Timeline for Class j: Peptides: