SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Class j: Peptides

  1. Root: SCOP 1.55
  2. Class j: Peptides [58231] (77 folds)

Folds:

  1. j.1: Membrane ion channel-forming peptide antibiotics containing D-aminoacids [58232] (1 superfamily)
  2. j.2: Lantibiotic peptides [58243] (1 superfamily)
  3. j.3: Antimicrobial beta-hairpin [58251] (1 superfamily)
  4. j.4: Antimicrobial helix [58268] (1 superfamily)
  5. j.5: Microcin J25 [58278] (1 superfamily)
  6. j.6: Peptide hormones [58283] (1 superfamily)
  7. j.7: delta-Toxin [58307] (1 superfamily)
  8. j.8: PSP1-like [58312] (1 superfamily)
  9. j.9: Arg-rich RNA binding peptides [58321] (6 superfamilies)
  10. j.10: DNA-binding domains of HMG-I(Y) [58348] (1 superfamily)
  11. j.11: VPR protein fragments [58353] (1 superfamily)
  12. j.12: Inactivation gate of potassium and sodium channels [58358] (1 superfamily)
  13. j.13: Coagulation factor VIII, membrane-binding peptide [58368] (1 superfamily)
  14. j.14: Phosphocholine cytidylyltransferase membrane-binding peptides [58373] (1 superfamily)
  15. j.15: Parathyroid hormone fragments (residues between 1 and 39) [58378] (1 superfamily)
  16. j.16: Corticotropin releasing factor [58384] (1 superfamily)
  17. j.17: Liposaccharide-binding protein CAP18 (residues 106-137) [58389] (1 superfamily)
  18. j.18: Polymorphic antigen SPAM-H1 (residues 90-127) [58394] (1 superfamily)
  19. j.19: Mellitin [58399] (1 superfamily)
  20. j.20: Tertiapin [58404] (1 superfamily)
  21. j.21: Antifreeze polypeptide HPLC-6 [58409] (1 superfamily)
  22. j.22: Troponin I fragments [58414] (1 superfamily)
  23. j.23: Pilin fragments [58420] (1 superfamily)
  24. j.24: RP71935 [58427] (1 superfamily)
  25. j.25: Atrial natriuretic peptide [58432] (1 superfamily)
  26. j.26: Compstatin [58437] (1 superfamily)
  27. j.27: Membrane-bound antimicrobial peptides [58442] (1 superfamily)
  28. j.28: Endothelin-like [58449] (1 superfamily)
  29. j.29: Heat-stable enterotoxin (HSE) [58457] (1 superfamily)
  30. j.30: Conotoxins [58464] (1 superfamily)
  31. j.31: Conantokin [58494] (1 superfamily)
  32. j.32: Contryphan-R [58502] (1 superfamily)
  33. j.33: Immunodominant region of protein G of BRSV [58507] (1 superfamily)
  34. j.34: Bradykinin antagonist B-9340 [58512] (1 superfamily)
  35. j.35: Transmembrane helical fragments [58517] (1 superfamily)
  36. j.36: Topogenic peptides [58555] (3 superfamilies)
  37. j.37: Phospholamban fragments [58568] (1 superfamily)
  38. j.38: Fragment of bowman-birk inhibitor [58574] (1 superfamily)
  39. j.39: Fragments of apolipoproteins [58579] (1 superfamily)
  40. j.40: Transactivation protein TAT [58593] (1 superfamily)
  41. j.41: Proline pipe [58599] (1 superfamily)
  42. j.42: Amyloid peptides [58604] (1 superfamily)
  43. j.43: Gelsolin fragment (residues 150-169) [58609] (1 superfamily)
  44. j.44: Acetylcholine receptor fragment (residues alpha 67-76) [58614] (1 superfamily)
  45. j.45: Thrombomodulin EGF domain fragment (residues 409-426) [58619] (1 superfamily)
  46. j.46: MoMLV p15 fragment (residues 409-426) [58624] (1 superfamily)
  47. j.47: Capsid protein major homology region peptide analog [58629] (1 superfamily)
  48. j.48: CD4 receptor peptide, res. 403-419 [58635] (1 superfamily)
  49. j.49: Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv [58640] (1 superfamily)
  50. j.50: GroES, fragment of mobile loop [58645] (1 superfamily)
  51. j.51: cAMP and cGMP phosphodiesterase (PDE) fragments [58650] (1 superfamily)
  52. j.52: HIV-1 Nef protein fragments [58657] (1 superfamily)
  53. j.53: HIV-1 envelope gp120 protein concensus V3 loop peptide [58662] (1 superfamily)
  54. j.54: Hepatitis C virus N-terminal capsid protein fragment 2-45 [58667] (1 superfamily)
  55. j.55: P27(KIP1) fragment 22-106 [58672] (1 superfamily)
  56. j.56: Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350) [58677] (1 superfamily)
  57. j.57: alpha-lactalbumin peptide model [58682] (1 superfamily)
  58. j.58: Coat protein-binding domain of bacteriophage p22 scaffolding protein [58687] (1 superfamily)
  59. j.59: Immunoreceptor tyrosine kinase activation motif, ITAM [58692] (1 superfamily)
  60. j.60: Cytoplasmic domain of the integrin alpha-iib subunit [58697] (1 superfamily)
  61. j.61: Human glutathione reductase (HGR) inhibitor [58702] (1 superfamily)
  62. j.62: Small subunit C-terminal inhibitory peptide of ribonucleotide reductase [58707] (1 superfamily)
  63. j.63: Histone H3 C-terminal fragment 130-135 [58712] (1 superfamily)
  64. j.64: Smad-binding domain of Sara [58717] (1 superfamily)
  65. j.65: Peptide derived from p-21 activated kinase [58722] (1 superfamily)
  66. j.66: pak1 autoregulatory domain [58728] (1 superfamily)
  67. j.67: Translocated intimin receptor (tir) intimin-binding domain [58733] (1 superfamily)
  68. j.68: Fragment 671-690 of the rabbit skeletal dihydropyridine receptor [58738] (1 superfamily)
  69. j.69: C-terminal negative regulatory domain of p53 [58743] (1 superfamily)
  70. j.70: FxFG nucleoporin repeats [58748] (1 superfamily)
  71. j.71: TCF3-CBD (catenin-binding domain) [58753] (1 superfamily)
  72. j.72: Synaptobrevin-II fragments [58758] (1 superfamily)
  73. j.73: VMIP-II fragment [58763] (1 superfamily)
  74. j.74: Papillomavirus e6-interacting peptide of e6ap [58768] (1 superfamily)
  75. j.75: Isolated insulin B-chain [58773] (1 superfamily)
  76. j.76: N-terminal hairpin of ubiquitin (residues 1-17) [58778] (1 superfamily)
  77. j.77: alpha-helical hairpin of p8mtcp1 [58783] (1 superfamily)

More info for Class j: Peptides

Timeline for Class j: Peptides: