SCOPe 2.08: Family d.15.4.1: 2Fe-2S ferredoxin-related

Lineage for Family d.15.4.1: 2Fe-2S ferredoxin-related

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.15: beta-Grasp (ubiquitin-like) [54235] (15 superfamilies)
   core: beta(2)-alpha-beta(2); mixed beta-sheet 2143

4. Superfamily d.15.4: 2Fe-2S ferredoxin-like [54292] (3 families)

5. Family d.15.4.1: 2Fe-2S ferredoxin-related [54293] (4 proteins)

Proteins:

1. 2Fe-2S ferredoxin [54294] (19 species)

   1. Species Anabaena sp., pcc 7119 and 7120 [TaxId:1167] [54295] (12 PDB entries)

   2. Species Aphanothece sacrum [TaxId:1122] [54297] (1 PDB entry)

   3. Species Chlorella fusca [TaxId:3073] [54300] (1 PDB entry)

   4. Species Equisetum arvense [TaxId:3258] [54301] (2 PDB entries)
      Uniprot P00237 # isoform II

   5. Species Haloarcula marismortui [TaxId:2238] [54302] (1 PDB entry)

   6. Species Halobacterium halobium [TaxId:2242] [64228] (2 PDB entries)

   7. Species Maize (Zea mays) [TaxId:4577] [54305] (5 PDB entries)

   8. Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [102799] (1 PDB entry)

   9. Species Parsley (Petroselinum crispum) [TaxId:4043] [54303] (1 PDB entry)

   10. Species Pseudomonas putida, putidaredoxin [TaxId:303] [54307] (20 PDB entries)

   11. Species Pseudomonas sp., terpredoxin [TaxId:306] [54309] (1 PDB entry)

   12. Species Rhodobacter capsulatus, ferredoxin VI [TaxId:1061] [64230] (2 PDB entries)

   13. Species Spinach (Spinacia oleracea) [TaxId:3562] [54304] (1 PDB entry)

   14. Species Spirulina platensis [TaxId:118562] [54296] (1 PDB entry)

   15. Species Synechococcus elongatus [TaxId:32046] [54299] (3 PDB entries)

   16. Species Synechocystis sp. PCC 6803 [TaxId:1148] [54298] (3 PDB entries)

   17. Species Synechocystis sp. [TaxId:1111708] [277072] (2 PDB entries)

   18. Species Thermosynechococcus elongatus [TaxId:197221] [277073] (3 PDB entries)

   19. Species Trichomonas vaginalis [TaxId:5722] [75365] (1 PDB entry)

2. Adrenodoxin [54310] (1 species)

   • Species Cow (Bos taurus) [TaxId:9913] [54311] (5 PDB entries)

3. Adrenodoxin-like ferredoxin [75366] (1 species)

   • Species Escherichia coli [TaxId:562] [75367] (1 PDB entry)

4. automated matches [190231] (14 species)
   not a true protein

   1. Species Anabaena sp. [311173] (3 PDB entries)

   2. Species Aphanothece sacrum [TaxId:1122] [189862] (1 PDB entry)

   3. Species Cow (Bos taurus) [TaxId:9913] [186995] (1 PDB entry)

   4. Species Cyanidioschyzon merolae [TaxId:45157] [189509] (2 PDB entries)

   5. Species Gloeobacter violaceus [TaxId:251221] [420077] (1 PDB entry)

   6. Species Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [385745] (4 PDB entries)

   7. Species Human (Homo sapiens) [TaxId:9606] [189528] (5 PDB entries)

   8. Species Leptolyngbya boryana [TaxId:1184] [195189] (1 PDB entry)

   9. Species Maize (Zea mays) [TaxId:4577] [329187] (2 PDB entries)

   10. Species Mastigocladus laminosus [TaxId:83541] [188017] (2 PDB entries)

   11. Species Pea (Pisum sativum) [TaxId:3888] [393615] (2 PDB entries)

   12. Species Prochlorococcus phage [TaxId:268746] [381207] (1 PDB entry)

   13. Species Synechocystis sp. [TaxId:1148] [255333] (1 PDB entry)

   14. Species Thermosynechococcus elongatus [TaxId:197221] [374112] (1 PDB entry)

More info for Family d.15.4.1: 2Fe-2S ferredoxin-related

Timeline for Family d.15.4.1: 2Fe-2S ferredoxin-related:

• Family d.15.4.1: 2Fe-2S ferredoxin-related first appeared (with stable ids) in SCOP 1.55
  
• Family d.15.4.1: 2Fe-2S ferredoxin-related appears in SCOPe 2.07