Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.15: beta-Grasp (ubiquitin-like) [54235] (15 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. Superfamily d.15.4: 2Fe-2S ferredoxin-like [54292] (3 families) (S)
  5. Family d.15.4.1: 2Fe-2S ferredoxin-related [54293] (4 proteins)
  6. Protein automated matches [190231] (14 species)
    not a true protein

Species:

  1. Anabaena sp. [311173] (3 PDB entries)
    1. Domain for 1qoc:
    2. Domain for 1qod:
    3. Domain for 1qoe:
  2. Aphanothece sacrum [TaxId:1122] [189862] (1 PDB entry)
  3. Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [385745] (3 PDB entries)
    1. Domains for 6kum:
      1. Domain d6kuma_: 6kum A: [385753]
        automated match to d1doya_
        complexed with ben, cl, fes, na, scn
      2. Domain d6kumb_: 6kum B: [385761]
        automated match to d1doya_
        complexed with ben, cl, fes, na, scn
    2. Domains for 6kv0:
      1. Domain d6kv0a_: 6kv0 A: [385762]
        automated match to d1doya_
        complexed with ben, cl, fes, na, scn
      2. Domain d6kv0b_: 6kv0 B: [385746]
        automated match to d1doya_
        complexed with ben, cl, fes, na, scn
    3. Domains for 6lk1:
      1. Domain d6lk1a_: 6lk1 A: [386145]
        automated match to d1doya_
        complexed with ben, fes, scn, so4
      2. Domain d6lk1b_: 6lk1 B: [386150]
        automated match to d1doya_
        complexed with ben, fes, scn, so4
  4. Cow (Bos taurus) [TaxId:9913] [186995] (1 PDB entry)
  5. Cyanidioschyzon merolae [TaxId:45157] [189509] (2 PDB entries)
    1. Domains for 3ab5:
      1. Domain d3ab5a_: 3ab5 A: [171912]
        automated match to d4fxca_
        complexed with fes
      2. Domain d3ab5b_: 3ab5 B: [171913]
        automated match to d4fxca_
        complexed with fes
    2. Domain for 3wcq:
  6. Human (Homo sapiens) [TaxId:9606] [189528] (5 PDB entries)
    1. Domains for 3n9y:
      1. Domain d3n9yc_: 3n9y C: [182107]
        Other proteins in same PDB: d3n9ya_, d3n9yb_
        automated match to d1e6eb_
        complexed with clr, fes, hem

        fragment; missing more than one-third of the common structure and/or sequence
      2. Domain d3n9yd_: 3n9y D: [182108]
        Other proteins in same PDB: d3n9ya_, d3n9yb_
        automated match to d1e6eb_
        complexed with clr, fes, hem

        fragment; missing more than one-third of the common structure and/or sequence
    2. Domains for 3n9z:
      1. Domain d3n9zc_: 3n9z C: [182109]
        Other proteins in same PDB: d3n9za_, d3n9zb_
        automated match to d1e6eb_
        complexed with fes, hc9, hem

        fragment; missing more than one-third of the common structure and/or sequence
      2. Domain d3n9zd_: 3n9z D: [182110]
        Other proteins in same PDB: d3n9za_, d3n9zb_
        automated match to d1e6eb_
        complexed with fes, hc9, hem

        fragment; missing more than one-third of the common structure and/or sequence
    3. Domains for 3na0:
      1. Domain d3na0c_: 3na0 C: [232993]
        Other proteins in same PDB: d3na0a_, d3na0b_
        automated match to d3n9yc_
        complexed with 2dc, fes, hem

        fragment; missing more than one-third of the common structure and/or sequence
      2. Domain d3na0d_: 3na0 D: [232994]
        Other proteins in same PDB: d3na0a_, d3na0b_
        automated match to d3n9yc_
        complexed with 2dc, fes, hem

        fragment; missing more than one-third of the common structure and/or sequence
    4. Domains for 3na1:
      1. Domain d3na1c_: 3na1 C: [182111]
        Other proteins in same PDB: d3na1a_, d3na1b_
        automated match to d1e6eb_
        complexed with fes, hcd, hem

        fragment; missing more than one-third of the common structure and/or sequence
      2. Domain d3na1d_: 3na1 D: [182112]
        Other proteins in same PDB: d3na1a_, d3na1b_
        automated match to d1e6eb_
        complexed with fes, hcd, hem

        fragment; missing more than one-third of the common structure and/or sequence
    5. Domains for 3p1m:
      1. Domain d3p1ma1: 3p1m A:66-184 [183454]
        Other proteins in same PDB: d3p1ma2, d3p1mb2, d3p1mc2, d3p1md2, d3p1me2, d3p1mf2, d3p1mg2, d3p1mh2
        automated match to d1e6eb_
        complexed with fes, flc, gol, k
      2. Domain d3p1mb1: 3p1m B:66-184 [183455]
        Other proteins in same PDB: d3p1ma2, d3p1mb2, d3p1mc2, d3p1md2, d3p1me2, d3p1mf2, d3p1mg2, d3p1mh2
        automated match to d1e6eb_
        complexed with fes, flc, gol, k
      3. Domain d3p1mc1: 3p1m C:65-184 [183456]
        Other proteins in same PDB: d3p1ma2, d3p1mb2, d3p1mc2, d3p1md2, d3p1me2, d3p1mf2, d3p1mg2, d3p1mh2
        automated match to d1e6eb_
        complexed with fes, flc, gol, k
      4. Domain d3p1md1: 3p1m D:65-184 [183457]
        Other proteins in same PDB: d3p1ma2, d3p1mb2, d3p1mc2, d3p1md2, d3p1me2, d3p1mf2, d3p1mg2, d3p1mh2
        automated match to d1e6eb_
        complexed with fes, flc, gol, k
      5. Domain d3p1me1: 3p1m E:65-184 [183458]
        Other proteins in same PDB: d3p1ma2, d3p1mb2, d3p1mc2, d3p1md2, d3p1me2, d3p1mf2, d3p1mg2, d3p1mh2
        automated match to d1e6eb_
        complexed with fes, flc, gol, k
      6. Domain d3p1mf1: 3p1m F:64-184 [183459]
        Other proteins in same PDB: d3p1ma2, d3p1mb2, d3p1mc2, d3p1md2, d3p1me2, d3p1mf2, d3p1mg2, d3p1mh2
        automated match to d1e6eb_
        complexed with fes, flc, gol, k
      7. Domain d3p1mg1: 3p1m G:64-184 [183460]
        Other proteins in same PDB: d3p1ma2, d3p1mb2, d3p1mc2, d3p1md2, d3p1me2, d3p1mf2, d3p1mg2, d3p1mh2
        automated match to d1e6eb_
        complexed with fes, flc, gol, k
      8. Domain d3p1mh1: 3p1m H:64-184 [183461]
        Other proteins in same PDB: d3p1ma2, d3p1mb2, d3p1mc2, d3p1md2, d3p1me2, d3p1mf2, d3p1mg2, d3p1mh2
        automated match to d1e6eb_
        complexed with fes, flc, gol, k
  7. Leptolyngbya boryana [TaxId:1184] [195189] (1 PDB entry)
  8. Maize (Zea mays) [TaxId:4577] [329187] (2 PDB entries)
    1. Domains for 5h57:
      1. Domain d5h57a_: 5h57 A: [329198]
        automated match to d2pvgc_
        complexed with fes
      2. Domain d5h57b_: 5h57 B: [329194]
        automated match to d2pvgc_
        complexed with fes
      3. Domain d5h57c_: 5h57 C: [329205]
        automated match to d2pvgc_
        complexed with fes
      4. Domain d5h57d_: 5h57 D: [329202]
        automated match to d2pvgc_
        complexed with fes
      5. Domain d5h57e_: 5h57 E: [329188]
        automated match to d2pvgc_
        complexed with fes
      6. Domain d5h57f_: 5h57 F: [329208]
        automated match to d2pvgc_
        complexed with fes
    2. Domain for 5h5j:
  9. Mastigocladus laminosus [TaxId:83541] [188017] (2 PDB entries)
    1. Domains for 1rfk:
      1. Domain d1rfka_: 1rfk A: [161682]
        automated match to d1j7aa_
        complexed with fes
      2. Domain d1rfkb_: 1rfk B: [161683]
        automated match to d1j7aa_
        complexed with fes
    2. Domains for 3p63:
      1. Domain d3p63a_: 3p63 A: [183547]
        automated match to d1czpa_
        complexed with fes
      2. Domain d3p63b_: 3p63 B: [183548]
        automated match to d1czpa_
        complexed with fes
  10. Pea (Pisum sativum) [TaxId:3888] [393615] (2 PDB entries)
    1. Domain for 6yac:
    2. Domain for 6yez:
  11. Prochlorococcus phage [TaxId:268746] [381207] (1 PDB entry)
  12. Synechocystis sp. [TaxId:1148] [255333] (1 PDB entry)
  13. Thermosynechococcus elongatus [TaxId:197221] [374112] (1 PDB entry)
  14. Gloeobacter violaceus [TaxId:251221] [420077] (1 PDB entry)

More info for Protein automated matches from d.15.4.1: 2Fe-2S ferredoxin-related

Timeline for Protein automated matches from d.15.4.1: 2Fe-2S ferredoxin-related: