SCOPe 2.08: Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3

Lineage for Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.81: Formate dehydrogenase/DMSO reductase, domains 1-3 [53705] (1 superfamily)
   contains of two similar intertwined domains related by pseudo dyad; duplication
   core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32451

4. Superfamily c.81.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53706] (2 families)
   molybdopterine enzyme

5. Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53707] (11 proteins)
   domain 1 (residues 1-55) binds Fe4S4 cluster in FDH but not DMSO reductase

Proteins:

1. Arsenite oxidase large subunit [53715] (1 species)

   • Species Alcaligenes faecalis [TaxId:511] [53716] (2 PDB entries)

2. Dimethylsulfoxide reductase (DMSO reductase) [53708] (2 species)

   1. Species Rhodobacter capsulatus [TaxId:1061] [53710] (10 PDB entries)

   2. Species Rhodobacter sphaeroides [TaxId:1063] [53709] (1 PDB entry)

3. Formate dehydrogenase H [53711] (1 species)

   • Species Escherichia coli [TaxId:562] [53712] (4 PDB entries)

4. Formate dehydrogenase N, alpha subunit [75317] (1 species)

   • Species Escherichia coli [TaxId:562] [75318] (2 PDB entries)

5. NADH-quinone oxidoreductase chain 3, Nqo3 [142751] (1 species)

   • Species Thermus thermophilus [TaxId:274] [142752] (1 PDB entry)
     Uniprot Q56223 247-685

6. Periplasmic nitrate reductase alpha chain [53717] (2 species)

   1. Species Desulfovibrio desulfuricans [TaxId:876] [53718] (5 PDB entries)
      dissimilatory nitrate reductase (NAP)

   2. Species Rhodobacter sphaeroides [TaxId:1063] [102672] (1 PDB entry)

7. Respiratory nitrate reductase 1 alpha chain [102673] (1 species)

   • Species Escherichia coli [TaxId:562] [102674] (7 PDB entries)
     Uniprot P09152

8. Transhydroxylase alpha subunit, AthL [110729] (1 species)

   • Species Pelobacter acidigallici [TaxId:35816] [110730] (6 PDB entries)
     Uniprot P80563

9. Trimethylamine N-oxide reductase [53713] (1 species)

   • Species Shewanella massilia [TaxId:76854] [53714] (1 PDB entry)

10. Tungsten containing formate dehydrogenase, large subunit [82536] (1 species)

    • Species Desulfovibrio gigas [TaxId:879] [82537] (1 PDB entry)

11. automated matches [227025] (5 species)
    not a true protein

    1. Species Desulfovibrio desulfuricans [TaxId:876] [255265] (3 PDB entries)

    2. Species Escherichia coli K-12 [TaxId:83333] [232054] (4 PDB entries)

    3. Species Ralstonia eutropha [TaxId:381666] [226101] (2 PDB entries)

    4. Species Thermus thermophilus HB8 [TaxId:300852] [255890] (3 PDB entries)

    5. Species Thermus thermophilus [TaxId:274] [393543] (1 PDB entry)

More info for Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3

Timeline for Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3:

• Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 first appeared (with stable ids) in SCOP 1.55
  
• Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 appears in SCOPe 2.07