Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2908420Fold c.81: Formate dehydrogenase/DMSO reductase, domains 1-3 [53705] (1 superfamily)
    contains of two similar intertwined domains related by pseudo dyad; duplication
    core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32451
  4. 2908421Superfamily c.81.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53706] (2 families) (S)
    molybdopterine enzyme
  5. 2908422Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53707] (11 proteins)
    domain 1 (residues 1-55) binds Fe4S4 cluster in FDH but not DMSO reductase
  6. 2908536Protein automated matches [227025] (5 species)
    not a true protein

Species:

  1. 2908537Desulfovibrio desulfuricans [TaxId:876] [255265] (3 PDB entries)
    1. Domain for 2jio:
    2. Domain for 2jiq:
    3. Domain for 2v3v:
  2. 2908541Escherichia coli K-12 [TaxId:83333] [232054] (4 PDB entries)
    1. Domain for 3egw:
    2. Domain for 3ir5:
    3. Domain for 3ir6:
    4. Domain for 3ir7:
  3. 2908546Ralstonia eutropha [TaxId:381666] [226101] (2 PDB entries)
    1. Domain for 3ml1:
    2. Domain for 3o5a:
  4. 2908549Thermus thermophilus HB8 [TaxId:300852] [255890] (3 PDB entries)
    1. Domains for 3i9v:
      1. 2908552Domain d3i9v33: 3i9v 3:247-685 [246757]
        Other proteins in same PDB: d3i9v11, d3i9v12, d3i9v13, d3i9v2_, d3i9v31, d3i9v32, d3i9v34, d3i9v4_, d3i9v5_, d3i9v6_, d3i9v7_, d3i9v9_, d3i9va1, d3i9va2, d3i9va3, d3i9vb_, d3i9vc1, d3i9vc2, d3i9vc4, d3i9vd_, d3i9ve_, d3i9vf_, d3i9vg_, d3i9vh_
        automated match to d2fug32
        complexed with ca, fes, fmn, mn, sf4
      2. 2908553Domain d3i9vc3: 3i9v C:247-685 [246770]
        Other proteins in same PDB: d3i9v11, d3i9v12, d3i9v13, d3i9v2_, d3i9v31, d3i9v32, d3i9v34, d3i9v4_, d3i9v5_, d3i9v6_, d3i9v7_, d3i9v9_, d3i9va1, d3i9va2, d3i9va3, d3i9vb_, d3i9vc1, d3i9vc2, d3i9vc4, d3i9vd_, d3i9ve_, d3i9vf_, d3i9vg_, d3i9vh_
        automated match to d2fug32
        complexed with ca, fes, fmn, mn, sf4
    2. Domains for 3iam:
      1. 2908550Domain d3iam33: 3iam 3:247-685 [246783]
        Other proteins in same PDB: d3iam11, d3iam12, d3iam13, d3iam2_, d3iam31, d3iam32, d3iam34, d3iam4_, d3iam5_, d3iam6_, d3iam7_, d3iam9_, d3iama1, d3iama2, d3iama3, d3iamb_, d3iamc1, d3iamc2, d3iamc4, d3iamd_, d3iame_, d3iamf_, d3iamg_, d3iamh_
        automated match to d2fug32
        complexed with ca, fes, fmn, mg, nai, sf4
      2. 2908551Domain d3iamc3: 3iam C:247-685 [246796]
        Other proteins in same PDB: d3iam11, d3iam12, d3iam13, d3iam2_, d3iam31, d3iam32, d3iam34, d3iam4_, d3iam5_, d3iam6_, d3iam7_, d3iam9_, d3iama1, d3iama2, d3iama3, d3iamb_, d3iamc1, d3iamc2, d3iamc4, d3iamd_, d3iame_, d3iamf_, d3iamg_, d3iamh_
        automated match to d2fug32
        complexed with ca, fes, fmn, mg, nai, sf4
    3. Domains for 3ias:
      1. 2908554Domain d3ias33: 3ias 3:247-685 [246849]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias31, d3ias32, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc1, d3iasc2, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl1, d3iasl2, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu1, d3iasu2, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug32
        complexed with ca, fes, fmn, sf4
      2. 2908555Domain d3iasc3: 3ias C:247-685 [246862]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias31, d3ias32, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc1, d3iasc2, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl1, d3iasl2, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu1, d3iasu2, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug32
        complexed with ca, fes, fmn, sf4
      3. 2908556Domain d3iasl3: 3ias L:247-685 [246875]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias31, d3ias32, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc1, d3iasc2, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl1, d3iasl2, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu1, d3iasu2, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug32
        complexed with ca, fes, fmn, sf4
      4. 2908557Domain d3iasu3: 3ias U:247-685 [246888]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias31, d3ias32, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc1, d3iasc2, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl1, d3iasl2, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu1, d3iasu2, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug32
        complexed with ca, fes, fmn, sf4
  5. 2908558Thermus thermophilus [TaxId:274] [393543] (1 PDB entry)

More info for Protein automated matches from c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3

Timeline for Protein automated matches from c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3: