SCOPe 2.07: Family c.23.6.1: Cobalamin (vitamin B12)-binding domain

Lineage for Family c.23.6.1: Cobalamin (vitamin B12)-binding domain

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.23: Flavodoxin-like [52171] (15 superfamilies)
   3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345

4. Superfamily c.23.6: Cobalamin (vitamin B12)-binding domain [52242] (1 family)

5. Family c.23.6.1: Cobalamin (vitamin B12)-binding domain [52243] (5 proteins)

Proteins:

1. D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain [117477] (1 species)
   most similar to the glutamate mutase subunit

   • Species Clostridium sticklandii [TaxId:1511] [117478] (1 PDB entry)
     Uniprot Q9ZFE5

2. Glutamate mutase, small subunit [52246] (2 species)

   1. Species Clostridium cochlearium [TaxId:1494] [52248] (6 PDB entries)

   2. Species Clostridium tetanomorphum [TaxId:1553] [52247] (3 PDB entries)

3. Methionine synthase, C-terminal domain [52244] (1 species)

   • Species Escherichia coli [TaxId:562] [52245] (5 PDB entries)

4. Methylmalonyl-CoA mutase alpha subunit, C-terminal domain [88717] (1 species)
   active subunit; binds B12

   • Species Propionibacterium freudenreichii, subsp. shermanii [TaxId:1744] [88718] (8 PDB entries)

5. Methylmalonyl-CoA mutase beta subunit, C-terminal domain [88719] (1 species)
   inactive subunit

   • Species Propionibacterium freudenreichii, subsp. shermanii [TaxId:1744] [88720] (8 PDB entries)

More info for Family c.23.6.1: Cobalamin (vitamin B12)-binding domain

Timeline for Family c.23.6.1: Cobalamin (vitamin B12)-binding domain:

• Family c.23.6.1: Cobalamin (vitamin B12)-binding domain first appeared (with stable ids) in SCOP 1.55
  
• Family c.23.6.1: Cobalamin (vitamin B12)-binding domain appears in SCOPe 2.06
  
• Family c.23.6.1: Cobalamin (vitamin B12)-binding domain appears in the current release, SCOPe 2.08