SCOPe 2.06: Family b.84.1.1: Biotinyl/lipoyl-carrier proteins and domains

Lineage for Family b.84.1.1: Biotinyl/lipoyl-carrier proteins and domains

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.84: Barrel-sandwich hybrid [51229] (5 superfamilies)
   sandwich of half-barrel shaped beta-sheets

4. Superfamily b.84.1: Single hybrid motif [51230] (2 families)
   7 to 8 strands in 2 beta-sheets

5. Family b.84.1.1: Biotinyl/lipoyl-carrier proteins and domains [51231] (7 proteins)

Proteins:

1. Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) [51234] (1 species)

   • Species Propionibacterium freudenreichii, subsp. shermanii [TaxId:1744] [51235] (3 PDB entries)

2. Biotinyl domain of acetyl-CoA carboxylase [51232] (1 species)

   • Species Escherichia coli [TaxId:562] [51233] (4 PDB entries)

3. Lipoyl domain of dihydrolipoamide acetyltransferase [51238] (5 species)
   component of the pyruvate dehydrogenase complex

   1. Species Azotobacter vinelandii [TaxId:354] [51240] (2 PDB entries)

   2. Species Bacillus stearothermophilus [TaxId:1422] [51239] (2 PDB entries)

   3. Species Escherichia coli [TaxId:562] [51241] (1 PDB entry)

   4. Species Human (Homo sapiens) [TaxId:9606] [51242] (8 PDB entries)

   5. Species Neisseria meningitidis [TaxId:487] [69364] (1 PDB entry)

4. Lipoyl domain of the 2-oxoglutarate dehydrogenase complex [51243] (2 species)

   1. Species Azotobacter vinelandii [TaxId:354] [51244] (2 PDB entries)

   2. Species Escherichia coli [TaxId:562] [51245] (1 PDB entry)

5. Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase [69365] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [69366] (2 PDB entries)

6. Protein H of glycine cleavage system [51236] (4 species)

   1. Species Escherichia coli K-12 [TaxId:83333] [189182] (6 PDB entries)

   2. Species Pea (Pisum sativum) [TaxId:3888] [51237] (3 PDB entries)

   3. Species Thermotoga maritima [TaxId:2336] [188189] (1 PDB entry)

   4. Species Thermus thermophilus [TaxId:274] [102003] (1 PDB entry)

7. automated matches [254572] (2 species)
   not a true protein

   1. Species Escherichia coli K-12 [TaxId:83333] [255326] (2 PDB entries)

   2. Species Thermoplasma acidophilum [TaxId:2303] [255407] (1 PDB entry)

More info for Family b.84.1.1: Biotinyl/lipoyl-carrier proteins and domains

Timeline for Family b.84.1.1: Biotinyl/lipoyl-carrier proteins and domains:

• Family b.84.1.1: Biotinyl/lipoyl-carrier proteins and domains first appeared (with stable ids) in SCOP 1.55
  
• Family b.84.1.1: Biotinyl/lipoyl-carrier proteins and domains appears in SCOPe 2.05
  
• Family b.84.1.1: Biotinyl/lipoyl-carrier proteins and domains appears in SCOPe 2.07
  
• Family b.84.1.1: Biotinyl/lipoyl-carrier proteins and domains appears in the current release, SCOPe 2.08