SCOPe 2.04: Domain d1hqmd_: 1hqm D:

Lineage for d1hqmd_ (1hqm D:)

1. Root: SCOPe 2.04

2. Class i: Low resolution protein structures [58117] (25 folds)

3. Fold i.8: RNA polymerase [58180] (1 superfamily)

4. Superfamily i.8.1: RNA polymerase [58181] (1 family)

5. Family i.8.1.1: RNA polymerase [58182] (2 proteins)

6. Protein DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits [58183] (1 species)

7. Species Thermus aquaticus [TaxId:271] [58184] (3 PDB entries)

8. Domain d1hqmd_: 1hqm D: [45975]
   complexed with mg, zn

Details for d1hqmd_

PDB Entry: 1hqm, 3.3 Å

PDB Description: crystal structure of thermus aquaticus core rna polymerase-includes complete structure with side-chains (except for disordered regions)- further refined from original deposition-contains additional sequence information

PDB Compounds: (D:) DNA-directed RNA polymerase

SCOPe Domain Sequences for d1hqmd_:

Sequence, based on SEQRES records:

>d1hqmd_ i.8.1.1 (D:) DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits {Thermus aquaticus [TaxId: 271]}
kevrkvrialaspekirswsygevekpetinyrtlkperdglfderifgpikdyecacgk
ykrqrfegkvcercgvevtrsivrryrmghielatpaahiwfvkdvpskigtlldlfate
leqvlyfnkyivldpkgavldgvpvekrqlltdxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxidarmgaeaiqellkeldleklerelleemkhpsrarrakarkrlevvraf
ldsgnrpewmileavpvlppdlrpmvqvdggrfatsdlndlyrrlinrnnrlkkllaqga
peiiirnekrmlqeavdavidngrrgspvtnpgserplrsltdilsgkqgrfrqnllgkr
vdysgrsvivvgpqlklhqcglpkrmalelfkpfllkkmeekafapnvkaarrmlerqrd
ikdevwdaleevihgkvvllnraptlhrlgiqafqpvlvegqsiqlhplvceafnadfdg
dqmavhvplssfaqaeariqmlsahnllspasgeplakpsrdiilglyyitqvrkekkga
gmafatpeealaayergevalnapivvagretsvgrlkfvfanpdeallavahglldlqd
tvttrylgrrletnpgrilfarivgeavgdekvaqeliqmdvpqeknslkdlvyqaflrl
gmektarlldalkyygftlsttsgiitigiddavipeekqryleeadrklrqieqayemg
fltdrerydqviqlwtettekvtqavfnnfeenypfnplyvmaqsgargnpqqirqlcgm
rglmqkpsgetfevpvrssfregltvleyfisshgarkggadtalrtadsgyltrklvdv
aheivvreadcgttkyisvplfqmdevtrtlrlrkrsdiesglygrvlarevealgrrle
egrylsledvhflikaaeagevrevpvrspltcqtrygvcqkcygydlsmarpvsigeav
gvvaaesigepgtqltmrtfhtggvavgtditqglprvielfearrpkakaviseidgvv
rieegedrlsvfvesegfskeyklpkdarllvkdgdyveagqpltrgaidphqlleakgp
eaverylvdeiqkvyraqgvklhdkhieivvrqmlkyvevtdpgdspllegqvlekwdve
alnerliaegkvpvawkpllmgvtksalstkswlsaasfqntthvlteaaiagkkdelig
lkenvilgrlipagtgsdfvrftqvvdqrtlkaie

Sequence, based on observed residues (ATOM records):

>d1hqmd_ i.8.1.1 (D:) DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits {Thermus aquaticus [TaxId: 271]}
kevrkvrialaspekirswsygevekpetegkvcercgvevtrsivrryrmghielatpa
ahiwfvkdvpskigtlldlfateleqvlyfnkyivldpkgavldgvpvekrqlltdxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxidarmgaeaiqellkeldleklerelle
emkhpsrarrakarkrlevvrafldsgnrpewmileavpvlppdatsdlndlyrrlinrn
nrlkkllaqgapeiiirnekrmlqeavdavidngrrgspvtnpgserplrsltdilsgkq
grfrqnllgkrvdysgrsvivvgpqlklhqcglpkrmalelfkpfllkkmeekafapnvk
aarrmlerqrdikdevwdaleevihgkvvllnraptlhrlgiqafqpvlvegqsiqlhpl
vceafnadfdgdqmavhvplssfaqaeariqmlsahnllspasgeplakpsrdiilglyy
itqvrkekkgagmafatpeealaayergevalnapivvagretsvgrlkfvfanpdeall
avahglldlqdtvttrylgrrletnpgrilfarivgeavgdekvaqeliqmdvpqeknsl
kdlvyqaflrlgmektarlldalkyygftlsttsgiitigiddavipeekqryleeadrk
lrqieqayemgfltdrerydqviqlwtettekvtqavfnnfeenypfnplyvmaqsgarg
npqqirqlcgmrglmqkpsgetfevpvrssfregltvleyfisshgarkggadtalrtad
sgyltrklvdvaheivvreadcgttkyisvplfqmdevtrtlrlrkrsdiesglygrvla
revealgrrleegrylsledvhflikaaeagevrevpvrspltcqtrygvcqkcygydls
marpvsigeavgvvaaesigepgtqltmrtgtditqglprvielfearrpkakaviseid
gvvrieegedrlsvfvesegfskeyklpkdarllvkdgdyveagqpltrgaidphqllea
kgpeaverylvdeiqkvyraqgvklhdkhieivvrqmlkyvevtdpgdspllegqvlekw
dvealnerliavpvawkpllmgvtksalstkswlsaasfqntthvlteaaiagkkdelig
lkenvilgrlipagtgsdfvrftqvvdqrtlkaie

Timeline for d1hqmd_:

• d1hqmd_ first appeared (with stable ids) in SCOP 1.55
  
• d1hqmd_ appears in SCOPe 2.03
  
• d1hqmd_ appears in SCOPe 2.05
  
• d1hqmd_ appears in the current release, SCOPe 2.08