SCOPe 2.01: Domain d1gfna_: 1gfn A:

Lineage for d1gfna_ (1gfn A:)

1. Root: SCOPe 2.01

2. Class f: Membrane and cell surface proteins and peptides [56835] (57 folds)

3. Fold f.4: Transmembrane beta-barrels [56924] (6 superfamilies)
   not a true fold, gathers together transmembrane barrels of different (n,S)

4. Superfamily f.4.3: Porins [56935] (4 families)

5. Family f.4.3.1: Porin [56936] (2 proteins)
   trimer, one subunit folds into (16,20) barrel

6. Protein Porin [56937] (5 species)

7. Species Escherichia coli, different sequences [TaxId:562] [56938] (15 PDB entries)

8. Domain d1gfna_: 1gfn A: [43754]
   complexed with c8e; mutant

Details for d1gfna_

PDB Entry: 1gfn, 3.1 Å

PDB Description: ompf porin deletion (mutant delta 109-114)

PDB Compounds: (A:) matrix porin outer membrane protein f

SCOPe Domain Sequences for d1gfna_:

Sequence, based on SEQRES records:

>d1gfna_ f.4.3.1 (A:) Porin {Escherichia coli, different sequences [TaxId: 562]}
aeiynkdgnkvdlygkavglhyfskgngensyggngdmtyarlgfkgetqinsdltgygq
weynfqgnnsegadaqtgnktrlafaglkyadvgsfdygrnygvvydalpefggdtaysd
dffvgrvggvatyrnsnffglvdglnfavqylgknerdtarrsngdgvggsisyeyegfg
ivgaygaadrtnlqeaqplgngkkaeqwatglkydanniylaanygetrnatpitnkftn
tsgfanktqdvllvaqyqfdfglrpsiaytkskakdvegigdvdlvnyfevgatyyfnkn
mstyvdyiinqidsdnklgvgsddtvavgivyqf

Sequence, based on observed residues (ATOM records):

>d1gfna_ f.4.3.1 (A:) Porin {Escherichia coli, different sequences [TaxId: 562]}
aeiynkdgnkvdlygkavglhyfskgngensyggngdmtyarlgfkgetqinsdltgygq
weynfqgnnsegadaqtgnktrlafaglkyadvgsfdygrnygvvydalpysddffvgrv
ggvatyrnsnffglvdglnfavqylgknerdtarrsngdgvggsisyeyegfgivgayga
adrtnlqeaqplgngkkaeqwatglkydanniylaanygetrnatpitnkftntsgfank
tqdvllvaqyqfdfglrpsiaytkskakdvegigdvdlvnyfevgatyyfnknmstyvdy
iinqidsdnklgvgsddtvavgivyqf

Timeline for d1gfna_:

• d1gfna_ first appeared (with stable ids) in SCOP 1.55, called d1gfn__
  
• d1gfna_ appears in SCOP 1.75
  
• d1gfna_ appears in SCOPe 2.02
  
• d1gfna_ appears in the current release, SCOPe 2.08