SCOP 1.65: Domain d1dpi_2: 1dpi 519-928

Lineage for d1dpi_2 (1dpi 519-928)

1. Root: SCOP 1.65

2. Class e: Multi-domain proteins (alpha and beta) [56572] (38 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (3 proteins)

6. Protein DNA polymerase I (Klenow fragment) [56674] (3 species)

7. Species Escherichia coli [TaxId:562] [56675] (14 PDB entries)

8. Domain d1dpi_2: 1dpi 519-928 [42985]
   Other proteins in same PDB: d1dpi_1
   complexed with zn

Details for d1dpi_2

PDB Entry: 1dpi, 2.8 Å

PDB Description: structure of large fragment of escherichia coli dna polymerase i complexed with d/tmp

SCOP Domain Sequences for d1dpi_2:

Sequence, based on SEQRES records:

>d1dpi_2 e.8.1.1 (519-928) DNA polymerase I (Klenow fragment) {Escherichia coli}
hkgplnvfeniemplvpvlsrierngvkidpkvlhnhseeltlrlaelekkaheiageef
nlsstkqlqtilfekqgikplkktpggapstseevleelaldyplpkvileyrglaklks
tytdklplminpktgrvhtsyhqavtatgrlsstdpnlqnipvrneegrrirqafiaped
yvivsadysqielrimahlsrdkglltafaegkdihrataaevfglpletvtseqrrsak
ainfgliygmsafglarqlniprkeaqkymdlyferypgvleymertraqakeqgyvetl
dgrrlylpdikssngarraaaeraainapmqgtaadiikramiavdawlqaeqprvrmim
qvhdelvfevhkddvdavakqihqlmenctrldvpllvevgsgenwdqah

Sequence, based on observed residues (ATOM records):

>d1dpi_2 e.8.1.1 (519-928) DNA polymerase I (Klenow fragment) {Escherichia coli}
hkgplnvfeniemplvpvlsrierngvkidpkvlhnhseeltlrlaelekkaheilpkvi
leyrglaklkstytdklplminpktgrvhtsyhqavtatgrlsstdpnlqnipvrneegr
rirqafiapedyvivsadysqielrimahlsrdkglltafaegkdihrataaevfglple
tvtseqrrsakainfgliygmsafglarqlnimdlyferypgvleymertraqakeqgyv
etldgrrlylpdikssngarraaaeraainapmqgtaadiikramiavdawlqaeqprvr
mimqvhdelvfevhkddvdavakqihqlmenctrldvpllvevgsgenwdqah

Timeline for d1dpi_2:

• d1dpi_2 first appeared (with stable ids) in SCOP 1.55
  
• d1dpi_2 appears in SCOP 1.63
  
• d1dpi_2 appears in SCOP 1.67
  
• d1dpi_2 appears in the current release, SCOPe 2.08, called d1dpia2