Lineage for d1dpi_2 (1dpi 519-928)

  1. Root: SCOP 1.67
  2. 423625Class e: Multi-domain proteins (alpha and beta) [56572] (40 folds)
  3. 424451Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 424452Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 424453Family e.8.1.1: DNA polymerase I [56673] (3 proteins)
  6. 424454Protein DNA polymerase I (Klenow fragment) [56674] (3 species)
  7. 424481Species Escherichia coli [TaxId:562] [56675] (14 PDB entries)
  8. 424493Domain d1dpi_2: 1dpi 519-928 [42985]
    Other proteins in same PDB: d1dpi_1
    complexed with zn

Details for d1dpi_2

PDB Entry: 1dpi (more details), 2.8 Å

PDB Description: structure of large fragment of escherichia coli dna polymerase i complexed with d/tmp

SCOP Domain Sequences for d1dpi_2:

Sequence, based on SEQRES records: (download)

>d1dpi_2 e.8.1.1 (519-928) DNA polymerase I (Klenow fragment) {Escherichia coli}
hkgplnvfeniemplvpvlsrierngvkidpkvlhnhseeltlrlaelekkaheiageef
nlsstkqlqtilfekqgikplkktpggapstseevleelaldyplpkvileyrglaklks
tytdklplminpktgrvhtsyhqavtatgrlsstdpnlqnipvrneegrrirqafiaped
yvivsadysqielrimahlsrdkglltafaegkdihrataaevfglpletvtseqrrsak
ainfgliygmsafglarqlniprkeaqkymdlyferypgvleymertraqakeqgyvetl
dgrrlylpdikssngarraaaeraainapmqgtaadiikramiavdawlqaeqprvrmim
qvhdelvfevhkddvdavakqihqlmenctrldvpllvevgsgenwdqah

Sequence, based on observed residues (ATOM records): (download)

>d1dpi_2 e.8.1.1 (519-928) DNA polymerase I (Klenow fragment) {Escherichia coli}
hkgplnvfeniemplvpvlsrierngvkidpkvlhnhseeltlrlaelekkaheilpkvi
leyrglaklkstytdklplminpktgrvhtsyhqavtatgrlsstdpnlqnipvrneegr
rirqafiapedyvivsadysqielrimahlsrdkglltafaegkdihrataaevfglple
tvtseqrrsakainfgliygmsafglarqlnimdlyferypgvleymertraqakeqgyv
etldgrrlylpdikssngarraaaeraainapmqgtaadiikramiavdawlqaeqprvr
mimqvhdelvfevhkddvdavakqihqlmenctrldvpllvevgsgenwdqah

SCOP Domain Coordinates for d1dpi_2:

Click to download the PDB-style file with coordinates for d1dpi_2.
(The format of our PDB-style files is described here.)

Timeline for d1dpi_2:

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Domains from same chain:
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d1dpi_1