SCOPe 2.08: Domain d6onma2: 6onm A:264-592

Lineage for d6onma2 (6onm A:264-592)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.128: Terpenoid synthases [48575] (1 superfamily)
   multihelical; core: 8 helices (C-J) are arranged in 2 parallel layers

4. Superfamily a.128.1: Terpenoid synthases [48576] (6 families)
   duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J

5. Family a.128.1.0: automated matches [196408] (1 protein)
   not a true family

6. Protein automated matches [196409] (46 species)
   not a true protein

7. Species Citrus sinensis [TaxId:2711] [332184] (4 PDB entries)

8. Domain d6onma2: 6onm A:264-592 [373657]
   Other proteins in same PDB: d6onma1
   automated match to d3n0fa2
   complexed with mn, mwg

Details for d6onma2

PDB Entry: 6onm, 2.7 Å

PDB Description: crystal structure of (+)-limonene synthase complexed with 8,9- difluorolinalyl diphosphate

PDB Compounds: (A:) (+)-limonene synthase

SCOPe Domain Sequences for d6onma2:

Sequence, based on SEQRES records:

>d6onma2 a.128.1.0 (A:264-592) automated matches {Citrus sinensis [TaxId: 2711]}
nhlllelaklefntlqaiyqeelkdisgwwkdtglgeklsfarnrlvasflwsmgiafep
qfaycrrvltisialitviddiydvygtldeleiftdavarwdinyalkhlpgymkmcfl
alynfvnefayyvlkqqdfdmllsikhawlgliqaylveakwyhskytpkleeylenglv
sitgpliitisylsgtnpiikkeleflesnpdivhwsskifrlqddlgtssdeiqrgdvp
ksiqcymhetgaseevarehikdmmrqmwkkvnaytadkdspltrttaefllnlvrmshf
mylhgdghgvqnqetidvgftllfqpipl

Sequence, based on observed residues (ATOM records):

>d6onma2 a.128.1.0 (A:264-592) automated matches {Citrus sinensis [TaxId: 2711]}
nhlllelaklefntlqaiyqeelkdisgwwkdtglgeklsfarnrlvasflwsmgiafep
qfaycrrvltisialitviddiydvygtldeleiftdavarwdinyalkhlpgymkmcfl
alynfvnefayyvlkqqdfdmllsikhawlgliqaylveakwyhskytpkleeylenglv
sitgpliitisylsgtnpiikkeleflesnpdivhwsskifrlqddlgtvpksiqcymhe
tgaseevarehikdmmrqmwkkvnaytadkdspltrttaefllnlvrmshfmylhgdvgf
tllfqpipl

Timeline for d6onma2:

• d6onma2 first appeared in SCOPe 2.07