SCOP 1.67: Domain d1uag_3: 1uag 94-297

Lineage for d1uag_3 (1uag 94-297)

1. Root: SCOP 1.67

2. Class c: Alpha and beta proteins (a/b) [51349] (130 folds)

3. Fold c.72: Ribokinase-like [53612] (3 superfamilies)
   core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
   potential superfamily: members of this fold have similar functions but different ATP-binding sites

4. Superfamily c.72.2: MurD-like peptide ligases, catalytic domain [53623] (2 families)
   has extra strand located between strands 1 and 2

5. Family c.72.2.1: MurCDEF [53624] (4 proteins)

6. Protein UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD [53625] (1 species)

7. Species Escherichia coli [TaxId:562] [53626] (6 PDB entries)

8. Domain d1uag_3: 1uag 94-297 [34957]
   Other proteins in same PDB: d1uag_1, d1uag_2
   complexed with so4, uma

Details for d1uag_3

PDB Entry: 1uag, 1.95 Å

PDB Description: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase

SCOP Domain Sequences for d1uag_3:

Sequence, based on SEQRES records:

>d1uag_3 c.72.2.1 (94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli}
dielfcreaqapivaitgsngkstvttlvgemakaagvnvgvggniglpalmllddecel
yvlelssfqlettsslqavaatilnvtedhmdrypfglqqyraaklriyenakvcvvnad
daltmpirgadercvsfgvnmgdyhlnhqqgetwlrvkgekvlnvkemklsgqhnytnal
aalaladaaglprasslkalttft

Sequence, based on observed residues (ATOM records):

>d1uag_3 c.72.2.1 (94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli}
dielfcreaqapivaitgsngkstvttlvgemakaagvnvgvggniglpalmllddecel
yvlelssfqlettsslqavaatilnvtedhmdrypfglqqyraaklriyenakvcvvnad
daltmpircvsfgvnmgdyhlnetwlrvkgekvlnvkemklsgqhnytnalaalaladaa
glprasslkalttft

Timeline for d1uag_3:

• d1uag_3 first appeared (with stable ids) in SCOP 1.55
  
• d1uag_3 appears in SCOP 1.65
  
• d1uag_3 appears in SCOP 1.69
  
• d1uag_3 appears in the current release, SCOPe 2.08, called d1uaga3