SCOPe 2.02: Domain d1rk2d_: 1rk2 D:

Lineage for d1rk2d_ (1rk2 D:)

1. Root: SCOPe 2.02

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.72: Ribokinase-like [53612] (3 superfamilies)
   core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
   potential superfamily: members of this fold have similar functions but different ATP-binding sites

4. Superfamily c.72.1: Ribokinase-like [53613] (6 families)
   has extra strand located between strands 2 and 3

5. Family c.72.1.1: Ribokinase-like [53614] (10 proteins)

6. Protein Ribokinase [53615] (3 species)

7. Species Escherichia coli [TaxId:562] [53616] (5 PDB entries)

8. Domain d1rk2d_: 1rk2 D: [34933]
   complexed with adp, alf, mg, rib

Details for d1rk2d_

PDB Entry: 1rk2, 2.25 Å

PDB Description: e. coli ribokinase complexed with ribose and adp, solved in space group p212121

PDB Compounds: (D:) ribokinase

SCOPe Domain Sequences for d1rk2d_:

Sequence; same for both SEQRES and ATOM records:

>d1rk2d_ c.72.1.1 (D:) Ribokinase {Escherichia coli [TaxId: 562]}
agslvvlgsinadhilnlqsfptpgetvtgnhyqvafggkganqavaagrsganiafiac
tgddsigesvrqqlatdniditpvsvikgestgvalifvngegenvigihaganaalspa
lveaqrerianasallmqlesplesvmaaakiahqnktivalnpaparelpdellalvdi
itpneteaekltgirvendedaakaaqvlhekgirtvlitlgsrgvwasvngegqrvpgf
rvqavdtiaagdtfngalitalleekplpeairfahaaaaiavtrkgaqpsvpwreeida
fldrq

Timeline for d1rk2d_:

• d1rk2d_ first appeared (with stable ids) in SCOP 1.55
  
• d1rk2d_ appears in SCOPe 2.01
  
• d1rk2d_ appears in SCOPe 2.03
  
• d1rk2d_ appears in the current release, SCOPe 2.08