SCOPe 2.06: Domain d5lodb_: 5lod B:

Lineage for d5lodb_ (5lod B:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
   core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest

4. Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (60 families)

5. Family c.66.1.26: C5 cytosine-specific DNA methylase, DCM [88786] (5 proteins)
   automatically mapped to Pfam PF00145

6. Protein DNA methylase HhaI [53367] (2 species)

7. Species Haemophilus parahaemolyticus [TaxId:735] [187136] (7 PDB entries)

8. Domain d5lodb_: 5lod B: [337854]
   automated match to d1skma_
   complexed with so4

Details for d5lodb_

PDB Entry: 5lod, 1.9 Å

PDB Description: crystal structure of hhai dna methyltransferase in apo form

PDB Compounds: (B:) modification methylase hhai

SCOPe Domain Sequences for d5lodb_:

Sequence, based on SEQRES records:

>d5lodb_ c.66.1.26 (B:) DNA methylase HhaI {Haemophilus parahaemolyticus [TaxId: 735]}
mieikdkqltglrfidlfaglggfrlalescgaecvysnewdkyaqevyemnfgekpegd
itqvnektipdhdilcagfpcqafsisgkqkgfedsrgtlffdiarivrekkpkvvfmen
vknfashdngntlevvkntmneldysfhakvlnaldygipqkreriymicfrndlniqnf
qfpkpfelntfvkdlllpdsevehlvidrkdlvmtnqeieqttpktvrlgivgkggqger
iystrgiaitlsaygggifaktggylvngktrklhprecarvmgypdsykvhpstsqayk
qfgnsvvinvlqyiaynigsslnfkpy

Sequence, based on observed residues (ATOM records):

>d5lodb_ c.66.1.26 (B:) DNA methylase HhaI {Haemophilus parahaemolyticus [TaxId: 735]}
mieikdkqltglrfidlfaglggfrlalescgaecvysnewdkyaqevyemnfgekpegd
itqvnektipdhdilcagfpcqafsgfedsrgtlffdiarivrekkpkvvfmenvknfas
hdngntlevvkntmneldysfhakvlnaldygipqkreriymicfrndlniqnfqfpkpf
elntfvkdlllpdsevehlvidrkdlvmtnqeieqttpktvrlgivgkggqgeriystrg
iaitlsaygggifaktggylvngktrklhprecarvmgypdsykvhpstsqaykqfgnsv
vinvlqyiaynigsslnfkpy

Timeline for d5lodb_:

• d5lodb_ is new in SCOPe 2.06-stable
  
• d5lodb_ appears in SCOPe 2.07
  
• d5lodb_ appears in the current release, SCOPe 2.08