SCOP 1.71: Domain d1c0md2: 1c0m D:54-216

Lineage for d1c0md2 (1c0m D:54-216)

1. Root: SCOP 1.71

2. Class c: Alpha and beta proteins (a/b) [51349] (134 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (10 families)
   consists of one domain of this fold

5. Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (1 protein)

6. Protein Retroviral integrase, catalytic domain [53108] (3 species)

7. Species Rous sarcoma virus (RSV, avian sarcoma virus) [53109] (21 PDB entries)

8. Domain d1c0md2: 1c0m D:54-216 [33643]
   Other proteins in same PDB: d1c0ma1, d1c0mb1, d1c0mc1, d1c0md1
   mutant

Details for d1c0md2

PDB Entry: 1c0m, 2.53 Å

PDB Description: crystal structure of rsv two-domain integrase

SCOP Domain Sequences for d1c0md2:

Sequence; same for both SEQRES and ATOM records:

>d1c0md2 c.55.3.2 (D:54-216) Retroviral integrase, catalytic domain {Rous sarcoma virus (RSV, avian sarcoma virus)}
glgplqiwqtdftleprmaprswlavtvdtassaivvtqhgrvtsvavqhhwataiavlg
rpkaiktdngscftskstrewlarwgiahttgipgnsqgqamveranrllkdrirvlaeg
dgfmkriptskqgellakamyalnhkergentktpiqkhwrpt

Timeline for d1c0md2:

• d1c0md2 first appeared (with stable ids) in SCOP 1.55
  
• d1c0md2 appears in SCOP 1.69
  
• d1c0md2 appears in SCOP 1.73
  
• d1c0md2 appears in the current release, SCOPe 2.08